BAC Information

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BAC

Clone NameMSMg01-453A18
Chromosome6 (Build37)
Map Location 82,523,578 - 82,688,546
singlet/doubletdoublet
Overlap genePole4, LOC100043412, Hk2
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A18.T7 (MSMg01no453_a18.b1)MSMg01-453A18.TJ (MSMg01no453_a18.g1)
ACCAG540154AG540155
length739741
length of high quality
(start - end)		602 (53 - 654)614 (80 - 693)
definitionCHROMAT_FILE: MSMg01no453_a18.b1 PHD_FILE: MSMg01no453_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:47 2005CHROMAT_FILE: MSMg01no453_a18.g1 PHD_FILE: MSMg01no453_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,523,578 - 82,524,179)(82,687,934 - 82,688,546)
sequence
NNTTTAAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTCCCCAGAAACCACATGTGGAAGCAGAAACCAACTC
TTCAGTTTGTTCTCTGATCACACACGGATGCTGTGGCATGATCATTGTAT
GCACAGGAGCATGTGTGCATACAAATACAGAAAAGTAAATGTGTGTGTGT
GTCTGTGTCTGTGTGTAAAACAAATAAGTGTTGAGAATGTAGCTCAGCTG
CTAGTGTGCTTGCCTAGCACGCACAAAGCCCTGGCTTCAGTCTCTAGAAC
CTCATACCCTGGGCTTTGTGGGGAACACTTACAATGCCAACATCCTGGAG
ATGAAGGCAGGAGGATCAAGAGTTTGAGGTCATCTGTGGCTACATAGAAA
GCTGGAGGTCAACCTGGGCTACACCAGACTATGTCTAAAATAAAATTTAA
AAAAAGAGTTCCCAAGGATATTGTACTAGGGCACACAGTAATCTTTGTGG
TACTATGTCCCCACATAGTCCCCTGTCCCTGGAGCTATTAGATTAGATAG
CTCAGGAGCCATCCCTGACCTTCTGCCGAGAGTTAATAAGTCTTTTTCAT
TCCCAGTGTTAAATAGGCTCCTGTAAACACATTGTACCTTTCCGTTTACA
ACATAGAGCTTAGAGACTCGACGTTATTTCCTTTTCTTCTGCAAATGTTC
ACACGCAAGTCCTGAAACTTGCCAGCAATTTGTGCTAAN

NNNGGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTCAACACTGCTCACATCCTAT
CTGTTTCCCAGCGATAAGGACGGAATCCAGAAGGCCTACCAGATCCTGGT
GCGCCTGGGTCTGAGCCCGCTGCAGGAGGACTGTGTGGCCACGCACCGAA
TCTGCCAGATTGTGTCCACGCGCTCAGCCAGCCTGTGTGCAGCCACCCTG
GCCGCGGTGCTATGGCGGATCAAAGAGAACAAGGGCGAGGAGCGACTCCG
CTCCACCATCGGCGTGGATGGCTCTGTCTACAAGAAACATCCCCAGTGAG
TGAGCAGGCCGGGGCTGGGAACAGAAGGGTCCCCTGGAGACTCCATGAGG
CAGCTCTGTATTGCTTTCCAGACAGCATAAGTGTTCTCCAGTCACTTGGT
ATGAGTGGGATTGCTTTCTGAAGGCAGCTGATGGCTTGCCCTCTGTTTAG
AGCTCCTGGTTGCTGAGTCCTTGGCTTGCTGCCTCCTCTTCCGCTCTGTT
TTGAGACAGGCTTGTCCTCTAGTCCCTCCCAGGCTGGCCTTAGACTCAAT
CTGTGCCCATGGGTGAACTTAAATTCTGATCCTCTTGTCTGTCCCCACCT
CCCAAGTTCTAGGATCACAGGTGTGTACCACCTTTCTGCAGAGTTTGCCA
TTGAATGCTCTGTGCATGGCAGGCAAGCACGTCCTCAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a18.b1 MSMg01no453_a18.b1 CHROMAT_FILE:
MSMg01no453_a18.b1 PHD_FILE: MSMg01no453_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:47 2005
         (602 letters)



>mm_chr6_82523378_82524379
          Length = 1002

 Score = 1083 bits (560), Expect = 0.0
 Identities = 590/602 (98%), Gaps = 4/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtccccagaaaccacatgtggaagcagaaaccaactcttcagtttgttctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcagtccccagaaaccacatgtggaagcagaaaccaactcttcagtttgttctctg 260

                                                                       
Query: 65  atcacacacggatgctgtggcatgatcattgtatgcacaggagcatgtgtgcatacaaat 124
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atcacacactgatgctgtggcatgatcattgtatgcgcaggagcatgtgtgcatacaaat 320

                                                                       
Query: 125 acagaaaagtaaatgtgtgtgtgtgt----ctgtgtctgtgtgtaaaacaaataagtgtt 180
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaagtaaatgtgtgtgtgtgtgtgtctgtgtctgtgtgtaaaacaaataagtgtt 380

                                                                       
Query: 181 gagaatgtagctcagctgctagtgtgcttgcctagcacgcacaaagccctggcttcagtc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gagaatgtagctcagctgctagtgtgcttgcctagcatgcacaaagccctggcttcagtc 440

                                                                       
Query: 241 tctagaacctcataccctgggctttgtggggaacacttacaatgccaacatcctggagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagaacctcataccctgggctttgtggggaacacttacaatgccaacatcctggagat 500

                                                                       
Query: 301 gaaggcaggaggatcaagagtttgaggtcatctgtggctacatagaaagctggaggtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gaaggcaggaggatcaagagtttgaggtcatctgtggctacatagcaagctggaggtcaa 560

                                                                       
Query: 361 cctgggctacaccagactatgtctaaaataaaatttaaaaaaagagttcccaaggatatt 420
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 561 cctgggctacaccagactatgtctgaaataaaattttaaaaaagagttcccaaggatatt 620

                                                                       
Query: 421 gtactagggcacacagtaatctttgtggtactatgtccccacatagtcccctgtccctgg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gtactagggcacacagtaatctttgtggtactatgtccccacatagtcccctctccctgg 680

                                                                       
Query: 481 agctattagattagatagctcaggagccatccctgaccttctgccgagagttaataagtc 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 agctattagattagatagctcaggagccatccctgaccttctgcggagagttaataagtc 740

                                                                       
Query: 541 tttttcattcccagtgttaaataggctcctgtaaacacattgtacctttccgtttacaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttcattcccagtgttaaataggctcctgtaaacacattgtacctttccgtttacaac 800

             
Query: 601 at 602
           ||
Sbjct: 801 at 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_a18.g1 MSMg01no453_a18.g1 CHROMAT_FILE:
MSMg01no453_a18.g1 PHD_FILE: MSMg01no453_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:47 2005
         (614 letters)



>mm_chr6_82687878_82688891
          Length = 1014

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%), Gaps = 1/614 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaacactgctcacatcctatctgtttcccagcgataaggacggaatccagaaggcctac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 669 tcaacactgctcacaccctatctgtttcccagcgataaggacggaattcagaaggcctac 610

                                                                       
Query: 61  cagatcctggtgcgcctgggtctgagcccgctgcaggaggactgtgtggccacgcaccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagatcctggtgcgcctgggtctgagcccgctgcaggaggactgtgtggccacgcaccga 550

                                                                       
Query: 121 atctgccagattgtgtccacgcgctcagccagcctgtgtgcagccaccctggccgcggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atctgccagattgtgtccacgcgctcagccagcctgtgtgcagccaccctggccgcggtg 490

                                                                       
Query: 181 ctatggcggatcaaagagaacaagggcgaggagcgactccgctccaccatcggcgtggat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctgtggcggatcaaagagaacaagggcgaggagcgactccgctccaccatcggcgtggat 430

                                                                       
Query: 241 ggctctgtctacaagaaacatccccagtgagtgagcaggccggggctgggaacagaaggg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 ggctctgtctacaagaaacatccccagtgagtgagcaagccggggctgggaacagaaggg 370

                                                                       
Query: 301 tcccctggagactccatgaggcagctctgtattgctttccagacagcataagtgttctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcccctggagactccatgaggcagctctgtattgctttccagacagcataagtgttctcc 310

                                                                       
Query: 361 agtcacttggtatgagtgggattgctttctgaaggcagctgatggcttgccctctgttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtcacttggtatgagtgggattgctttctgaaggcagctgatggcttgccctctgttta 250

                                                                       
Query: 421 gagctcctggttgctgagtccttggcttgctgcctcctcttccgctctgttttgagacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagctcctggttgctgagtccttggcttgctgcctcctcttccgctctgttttgagacag 190

                                                                       
Query: 481 gcttgtcctctagtccctcccaggctggccttagactcaatctgtgcccatgggtgaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 189 gcttgtcctctagtccctcccaggctggccttagactcaatctgtgcccat-ggcgaact 131

                                                                       
Query: 541 taaattctgatcctcttgtctgtccccacctcccaagttctaggatcacaggtgtgtacc 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 130 taaattctgatcctcttgtctgtccccgcctcccaagttctaggatcacaggtgtgtacc 71

                         
Query: 601 acctttctgcagag 614
           ||||||||||||||
Sbjct: 70  acctttctgcagag 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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