Query= MSMg01no453_b05.b1 MSMg01no453_b05.b1 CHROMAT_FILE:
MSMg01no453_b05.b1 PHD_FILE: MSMg01no453_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:49 2005
(275 letters)
>mm_chr6_3649188_3649866
Length = 679
Score = 462 bits (239), Expect = e-135
Identities = 261/271 (96%), Gaps = 8/271 (2%)
Strand = Plus / Plus
Query: 5 gaattcaagttactttctgtctttccaa-tacctaatataaggaggaaatacttcctttt 63
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgagttactttctgtctttccaaatacctaatataaggaggaaatacttcctttt 264
Query: 64 ttttttttttttt-----aacctgtggctagaccattgaactggagagctattgcctatg 118
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttttttttttttttttaacctgtggctagaccattgaactggagagctattgcctatg 324
Query: 119 ccaggaccaattagcagtgttccatcctgtggttgctgtgagtgtaattatatttatgtt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaggaccaattagcagtgttccatcctgtggttgctgtgagtgtaattatatttatgtt 384
Query: 179 tctacttggattttgnctaatgaagttttaaatattttctggtcaaggaaagttaaggta 238
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 tctacttggattttg-ctaatgaagttttaaatattttctgatcaaggaaagttaaggta 443
Query: 239 ttgtataaatatgtcattagcattctcttcc 269
||||||||||||||||||||||||| |||||
Sbjct: 444 ttgtataaatatgtcattagcattc-cttcc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 679
Length adjustment: 9
Effective length of query: 266
Effective length of database: 670
Effective search space: 178220
Effective search space used: 178220
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no453_b05.g1 MSMg01no453_b05.g1 CHROMAT_FILE:
MSMg01no453_b05.g1 PHD_FILE: MSMg01no453_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:49 2005
(676 letters)
>mm_chr6_3820873_3821948
Length = 1076
Score = 1276 bits (660), Expect = 0.0
Identities = 672/676 (99%)
Strand = Plus / Minus
Query: 1 tcacctgaggaatactgaatggcagggaagcacctgaaaaaatgttcagcatccttagtc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1057 tcacctgaggaatactgaatggcagggaagcacctgaaaagatgttcagcatccttagtc 998
Query: 61 atcagggaaatgcaaatcaaaacaaccctgaaattccacctcataccagtcaaaatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 atcagggaaatgcaaatcaaaacaaccctgaaattccacctcataccagtcaaaatggct 938
Query: 121 aagatcaaaaattcaggtgacagcagatgctggtgaggatgttgagaggaattttcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aagatcaaaaattcaggtgacagcagatgctggtgaggatgttgagaggaattttcttca 878
Query: 181 tgtttctttagtgagacagaaactttctgtatgaaggagacatgcacttgcatgtctact 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 877 tgtttctttagtgagacagaaactttctgtatgaaggatacatgcacttgcatgtctact 818
Query: 241 tactgtatcatgaaaactaaagcatcaagaggataaacattttattctttgggtttataa 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tcctgtatcatgaaaactaaagcatcaagaggataaacattttattctttgggtttataa 758
Query: 301 ctcctattataataattttaaattgtacttatagaacctaaaagatagatttttaaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ctcctattataataattttaaattgtacttatagaacctaaaagatagatttttaaatac 698
Query: 361 attcattctttaaaacaaaggcataactttaagaatagttgatgaattaattggaaatat 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 attctttctttaaaacaaaggcataactttaagaatagttgatgaattaattggaaatat 638
Query: 421 tttatggagatctgcatatacatatactttttacattgcagtgttacttaaagcctagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tttatggagatctgcatatacatatactttttacattgcagtgttacttaaagcctagga 578
Query: 481 gaaacaataaattcctctaaccacatttcctcaaaccagagctgttatgcttacaatcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaaacaataaattcctctaaccacatttcctcaaaccagagctgttatgcttacaatcat 518
Query: 541 atttggacaagtctattttcaaataaagcatgacacaaaacacagcttttcaaataagcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atttggacaagtctattttcaaataaagcatgacacaaaacacagcttttcaaataagcg 458
Query: 601 attgctttgaattctgtaacctgccagtacattctcttcatggtagaaagtgaactcctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attgctttgaattctgtaacctgccagtacattctcttcatggtagaaagtgaactcctt 398
Query: 661 atataattaatttagt 676
||||||||||||||||
Sbjct: 397 atataattaatttagt 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
