BAC Information

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BAC

Clone NameMSMg01-453B15
Chromosome6 (Build37)
Map Location 40,718,792 - 40,719,507
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453B15.T7 (MSMg01no453_b15.b1)MSMg01-453B15.TJ (MSMg01no453_b15.g1)
ACCAG540196AG540197
length768767
length of high quality
(start - end)		720 (46 - 765)691 (77 - 767)
definitionCHROMAT_FILE: MSMg01no453_b15.b1 PHD_FILE: MSMg01no453_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:51 2005CHROMAT_FILE: MSMg01no453_b15.g1 PHD_FILE: MSMg01no453_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATCATGTGGCAAGGGTCTTTCTCCTTCTGAGTCATCTTGACAG
CCCAGCAATACAATTCTTTATATATATTTCAATTAGTGCTTTAATCAATA
CAGATGTAAATCCTGTTTTGGTTTTGGTTTTTTGTCATGTTTGATATATT
ACCACCTACAGTAAGTGCTATGATTCCTAAACAATATTCATAGCTTATGA
GAAAGTCACTACCAAGTTGTATGAGAAGGTCACTGATTAGAAACCATAAT
CTATTCCTGTACCAGACTGCAGGAGCTCTGATGGCACGGCAAACAAGAGA
GACAAGCTCAGGTAAGTCTTCTGAACACCAGGAAGCCTAATTCCAAAGTG
AAGTCCCCAAGAACAAACATCCCAACATTGAAAATGTCTTTCAAATTCAG
TGCTTTATTTTTCTGTGGCATGTAAATCATAGATGTTTGTGTGAACTGTT
TTTATGTACATGAGATATGGTCAACAAATAAGATTTATACACTTTGAAGC
ATACTTCTATAAAGCAACTTATTTTGTACATCCAACTCCTTCCATCAGCT
CTCTCTACTTAAATCTCCTCCCCATAGCCTTCCTGAATGGTAATACTTTC
TCCAACCTACTATTCTCCTTCCAGTGAGTTGGCTCCTCCTTTCCCCTCCA
CACAAGGATGACTTTCCTCTCCAGAAGATAACTGTTATTCTTGCTGTTGC
CTACCTTTGCTTCACATC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTCATGCCTCCTCCCCTTCT
CCTCTGAAAGGGTGGTCCCCCTAGGTATCCTCCCACCCTGGCACATCAAG
TCTTTGCTAGGTTCATCTTCTCCCACTGAGGCCAGGCAAGGCAGCCCAAT
TTGGGGAAAAGATTCCACAGATAGGCAACAGCTTTAGAGACAATCCCTGT
TGTTGGGGGACCCACATGAAGACTGGGTGCTCATCTGCTACAAGAAATGC
AGGGACAAAGATGGAGCAGAGACTGATGGAATGGTCAACCAATAGCCTGC
CCAACTTGAGACCCATCCCACGGGCAAGCACCAATCCCTGACACGATTAA
TGATCTGCTGTTATGCTTCCAGATAGGAACCTAGCATAACTGCCCTATGA
GAGGTTCCACCTAGCAGCAGACTGAAACAGATGCAGAGACCCACAGTCTA
ACACTGGATAGAGCTTGGAGACTCTTAGGGAAGAGTTAGGAGAAGGACTG
AGGGCCTTGGAGTGGATAGGACCTTCACAGGAAGACCGTCAGAGTCAACT
AACTTGGACTCTTGGGTCCTCTTAGAGTCTGAGCAACCAACCAAAGAACA
TACACTGGCTGGAACAAGGCCCCTGACTCATATGTACATGTGCAGCTCAT
TTGATTTCAATATACTTGAATTCTTAGAATTTTGGAAATCAGTGTTTCCC
ATTGACCTACATTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_b15.b1 MSMg01no453_b15.b1 CHROMAT_FILE:
MSMg01no453_b15.b1 PHD_FILE: MSMg01no453_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:51 2005
         (720 letters)



>mm_chr6_40718588_40719707
          Length = 1120

 Score = 1369 bits (708), Expect = 0.0
 Identities = 714/716 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatcatgtggcaagggtctttctccttctgagtcatcttgacagcccagcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gaattcagatcatgtggcaagggtctttctccttctgagtcatcttgacagcccagcaat 861

                                                                       
Query: 65  acaattctttatatatatttcaattagtgctttaatcaatacagatgtaaatcctgtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 acaattctttatatatatttcaattagtgctttaatcaatacagatgtaaatcctgtttt 801

                                                                       
Query: 125 ggttttggttttttgtcatgtttgatatattaccacctacagtaagtgctatgattccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggttttggttttttgtcatgtttgatatattaccacctacagtaagtgctatgattccta 741

                                                                       
Query: 185 aacaatattcatagcttatgagaaagtcactaccaagttgtatgagaaggtcactgatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacaatattcatagcttatgagaaagtcactaccaagttgtatgagaaggtcactgatta 681

                                                                       
Query: 245 gaaaccataatctattcctgtaccagactgcaggagctctgatggcacggcaaacaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaaccataatctattcctgtaccagactgcaggagctctgatggcacggcaaacaagag 621

                                                                       
Query: 305 agacaagctcaggtaagtcttctgaacaccaggaagcctaattccaaagtgaagtcccca 364
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 620 agacaagctcaggtaagtcttcttaacaccaggaagcctaatgccaaagtgaagtcccca 561

                                                                       
Query: 365 agaacaaacatcccaacattgaaaatgtctttcaaattcagtgctttatttttctgtggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaacaaacatcccaacattgaaaatgtctttcaaattcagtgctttatttttctgtggc 501

                                                                       
Query: 425 atgtaaatcatagatgtttgtgtgaactgtttttatgtacatgagatatggtcaacaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgtaaatcatagatgtttgtgtgaactgtttttatgtacatgagatatggtcaacaaat 441

                                                                       
Query: 485 aagatttatacactttgaagcatacttctataaagcaacttattttgtacatccaactcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagatttatacactttgaagcatacttctataaagcaacttattttgtacatccaactcc 381

                                                                       
Query: 545 ttccatcagctctctctacttaaatctcctccccatagccttcctgaatggtaatacttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttccatcagctctctctacttaaatctcctccccatagccttcctgaatggtaatacttt 321

                                                                       
Query: 605 ctccaacctactattctccttccagtgagttggctcctcctttcccctccacacaaggat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctccaacctactattctccttccagtgagttggctcctcctttcccctccacacaaggat 261

                                                                   
Query: 665 gactttcctctccagaagataactgttattcttgctgttgcctacctttgcttcac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gactttcctctccagaagataactgttattcttgctgttgcctacctttgcttcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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