BAC Information

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BAC

Clone NameMSMg01-453M07
Chromosome6 (Build37)
Map Location 72,136,122 - 72,136,667
singlet/doubletsinglet
Overlap genenone
Upstream geneFabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5
Downstream geneAtoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M07.T7 (MSMg01no453_m07.b1)MSMg01-453M07.TJ (MSMg01no453_m07.g1)
ACCAG540703AG540704
length741738
length of high quality
(start - end)
530 (54 - 583)534 (82 - 615)
definitionCHROMAT_FILE: MSMg01no453_m07.b1 PHD_FILE: MSMg01no453_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005CHROMAT_FILE: MSMg01no453_m07.g1 PHD_FILE: MSMg01no453_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGTTGAATACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGAAGGGCATCATCATGAGTGAGGTAACACAT
TCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC
CCAAACCTAGGATACCCAAGATATAAGATACAACTTGCTAAACACATGAA
ACTCAGGATGAATGAAGACTGAAGTGTGGACACTATGCCCC
GGGCGCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGGGACTGAAAGGCATG
CATGGGGTGTTTGAGTCCTAAATACCCCTGGGGAGCCACAGGATTTTTCT
GTGGGAGCCACAGTTGGGGTACCACCTAAGGCCGTGTGGCTGACCCAGAG
TTCTTTCTAAGCACTGAAAAGGGAGGAATCAGTGTTGGGGAGGCTGGTGT
GCCCTGATTTGGCACCTACAGAATTTGTAGCTTGGTGGCCCCCACTTCTG
CCCTAACCATTCTGTAGCTTTGACATTCTGGAGAACAACCCATATCCAGA
AAAAGGCTGTTCTGAGCCTAGAGTGCCCTGTTGGGGACACCCCTGATGCC
TAACAGATTTGGTGATGCCTTGCGAACACATAGTGGCTTCAGACCCACAA
GACTTCCCAGGCTCCCAGAAGGTCCCAGTGCTGTGAACCTGTTATGTTGG
AGTCTGGAGGTGCTTAGAACCTGGTGTCCACACATTGGTGACCCAAGAAT
CTGATTGTTCTACTGGAAGCAGGGGAGAGCTGCCAGACAGCACACCTTAT
TCCATTAACAGTCCTTGAAATTGGTGGCCTCAGAGAGGGAACGTCTTCAT
GGTGCGGCACCGCCCTCTGCTGGCCAGATTGGGAAGTTCTGTCACACAGT
ACAGGTGGAGGTGATCTTATGGTGGGCTTTCCACCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m07.g1 MSMg01no453_m07.g1 CHROMAT_FILE:
MSMg01no453_m07.g1 PHD_FILE: MSMg01no453_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:45 2005
         (534 letters)



>mm_chr6_72135817_72136748
          Length = 932

 Score =  920 bits (476), Expect = 0.0
 Identities = 521/548 (95%), Gaps = 20/548 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggactgaaaggcatgcatggggtgtttgagtcctaaatacccctggggagccacaggatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggactgaaaggcatgcatggggtgtttgagtcctaaatacccctggggagccacaggatt 792

                                                                       
Query: 65  tttctgtgggagccacagttggggtaccacctaaggccgtg------------------t 106
           |||||||||||||||||||||||||||||||||||||||||                  |
Sbjct: 791 tttctgtgggagccacagttggggtaccacctaaggccgtgtggctgagcttgagggaat 732

                                                                       
Query: 107 ggctgacccagagttctttctaagcactgaaaagggaggaatcagtgttggggaggctgg 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggctgacccagagttctttctaagcactgaaaagggaggaatcagtgttggggaggctgg 672

                                                                       
Query: 167 tgtgccctgatttggcacctacagaatttgtagcttggtggcccccacttctgccctaac 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgtgccctgatttggcacctacagaatttgtagcttggtggcccccacttctgccctaac 612

                                                                       
Query: 227 cattctgtagctttgacattctggagaacaacccatatccagaaaaaggctgttctgagc 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cattctgtagctttgacattctggagaacaacccatatccagaaaaaggctgttctgagc 552

                                                                       
Query: 287 ctagagtgccctgttggggacacccctgatgcctaacagatttggtgatgccttgcgaac 346
           |||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 551 ctagagtgccctct--aggacacccctgatgcctaacagatttggtgatgccttgtgaac 494

                                                                       
Query: 347 acatagtggcttcagacccacaagacttcccaggctcccagaaggtcccagtgctgtgaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acatagtggcttcagacccacaagacttcccaggctcccagaaggtcccagtgctgtgaa 434

                                                                       
Query: 407 cctgttatgttggagtctggaggtgcttagaacctggtgtccacacattggtgacccaag 466
           ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 433 cctgttatggtggagtccggaggtgcttagaacctggtgttcacacattggtgacccaag 374

                                                                       
Query: 467 aatctgattgttctactggaagcaggggagagctgccagacagcacaccttattccatta 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aatctgattgttctactggaagcaggggagagctgccagacagcacaccttattccatta 314

                   
Query: 527 acagtcct 534
           ||| ||||
Sbjct: 313 acaatcct 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 932
Length adjustment: 10
Effective length of query: 524
Effective length of database: 922
Effective search space:   483128
Effective search space used:   483128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)