BAC Information

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BAC

Clone NameMSMg01-453O19
Chromosome6 (Build37)
Map Location 18,048,391 - 18,049,043
singlet/doubletsinglet
Overlap geneAsz1
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453O19.T7 (MSMg01no453_o19.b1)MSMg01-453O19.TJ (MSMg01no453_o19.g1)
ACCAG540823AG540824
length765766
length of high quality
(start - end)		658 (45 - 702)654 (74 - 727)
definitionCHROMAT_FILE: MSMg01no453_o19.b1 PHD_FILE: MSMg01no453_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:57 2005CHROMAT_FILE: MSMg01no453_o19.g1 PHD_FILE: MSMg01no453_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAAAAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACTAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATTCCGCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGTA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCATGAA
GAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACA
AAACATCCATGGAAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCAGCAGGAGAAGCAGCAAAAGTATT
GGAGCAGCTAAGAACTGTTATACAGCTGGCATGACGACATACACCTTTCA
TGCCAGCACTATAGAGGCTCTATGACGCTGAGGCTAGCCTGATCTACACA
GCAAGTTCCAACCTGCCAGAGCTATATAACAAAACCCTGTCTCAAGAAAA
CTCTGGATAGTAAATGTTTACCTTTAAGTGAAAAAAAATTTCAGTTTGTA
GATCAAAAATAAAAGGCCCACTATAAAAAGGCTAAGTTATATTTGTTTTT
AGTTTTAGCTTCTTTGTAAGAGAACTGCTGGAAAACTTTCTCCTATGTCA
ATGAATGGGTAAGTGAAGAACACCATCACAACTCAGGGCAACAAACATGG
AGAGGATGTTGACTCTGGAAAGAGTTTAGAATTCATAGATGTACAAGACT
AGGGAGTCTCTGATAGGGATAGTCTAGGTTCCTGGGTGCCTTCTCTTGGA
GGAGAAAGGCAGAAAGAGTTCCAGCCGATAATGAAGGTAGAACACTTGAA
GTTCATGTCACCCACAACAAGAGTTCCACTCACTACACACCAACAACTTG
ATCTGAACTTTATCAAACAATATAAAGTATTTTTCCTAAATAGTCTAAAA
AGATGAATCCAGACAGAATGGAAGGAAGAAAGGAGGGAGGGAGAGAGTAA
TGAGAGGAAGAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_o19.g1 MSMg01no453_o19.g1 CHROMAT_FILE:
MSMg01no453_o19.g1 PHD_FILE: MSMg01no453_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:57 2005
         (654 letters)



>mm_chr6_18048191_18049243
          Length = 1053

 Score = 1241 bits (642), Expect = 0.0
 Identities = 651/654 (99%), Gaps = 1/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagcaggagaagcagcaaaagtattggagcagctaagaactgttatacagctggcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagcaggagaagcagcaaaagtattggagcagctaagaactgttatacagctggcatg 260

                                                                       
Query: 61  acgacatacacctttcatgccagcactatagaggctctatgacgctgaggctagcctgat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 acgacatacacctttcatgccagcactatagaggctctatgacgctgaggctagcctggt 320

                                                                       
Query: 121 ctacacagcaagttccaacctgccagagctatataacaaaaccctgtctcaagaaaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacacagcaagttccaacctgccagagctatataacaaaaccctgtctcaagaaaactc 380

                                                                       
Query: 181 tggatagtaaatgtttacctttaagtgaaaaaaaatttcagtttgtagatcaaaaataaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tggatagtaaatgtttacctttaagtgaaaaaaa-tttcagtttgtagatcaaaaataaa 439

                                                                       
Query: 241 aggcccactataaaaaggctaagttatatttgtttttagttttagcttctttgtaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggcccactataaaaaggctaagttatatttgtttttagttttagcttctttgtaagaga 499

                                                                       
Query: 301 actgctggaaaactttctcctatgtcaatgaatgggtaagtgaagaacaccatcacaact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 actgctggaaaactttctcctatgtcaatgaatgggtaagtgaagaacaccaccacaact 559

                                                                       
Query: 361 cagggcaacaaacatggagaggatgttgactctggaaagagtttagaattcatagatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagggcaacaaacatggagaggatgttgactctggaaagagtttagaattcatagatgta 619

                                                                       
Query: 421 caagactagggagtctctgatagggatagtctaggttcctgggtgccttctcttggagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caagactagggagtctctgatagggatagtctaggttcctgggtgccttctcttggagga 679

                                                                       
Query: 481 gaaaggcagaaagagttccagccgataatgaaggtagaacacttgaagttcatgtcaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaaggcagaaagagttccagccgataatgaaggtagaacacttgaagttcatgtcaccc 739

                                                                       
Query: 541 acaacaagagttccactcactacacaccaacaacttgatctgaactttatcaaacaatat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaacaagagttccactcactacacaccaacaacttgatctgaactttatcaaacaatat 799

                                                                 
Query: 601 aaagtatttttcctaaatagtctaaaaagatgaatccagacagaatggaaggaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaagtatttttcctaaatagtctaaaaagatgaatccagacagaatggaaggaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space:   671692
Effective search space used:   671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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