BAC Information

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BAC

Clone NameMSMg01-454A17
Chromosome6 (Build37)
Map Location 11,032,768 - 11,056,483
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454A17.T7 (MSMg01no454_a17.b1)MSMg01-454A17.TJ (MSMg01no454_a17.g1)
ACCAG540914AG540915
length759767
length of high quality
(start - end)		473 (46 - 518)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no454_a17.b1 PHD_FILE: MSMg01no454_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:07 2005CHROMAT_FILE: MSMg01no454_a17.g1 PHD_FILE: MSMg01no454_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,056,140 - 11,056,483)(11,032,768 - 11,033,242)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAATATGCCAAGTTATGTCTAAAATACAGAGCAATGTCTAATTC
AGAGGCAAAACAGCCTCTCCATCTTTCAGTGATAGTCTCTATACCTTTTA
AGTATTTAGAATTCATCAGTATGGCTAAGGTTCTATGCAGGCAGTGGGCA
TGGGGGAGTAAAGGGAGTGAGAGAAAACCCACATCCTGCCAGAGTTCCAG
TGTTCTGGGTGGGCAGACGTAGAGGACTTCCACAAGGTTTCTATGTGGCC
CCTGGTGGGTGTCTTTCTGTGGGAAGCTACAGACCTAGCCCACGGGGGTG
GACAAGGGGATGTCCTAGATTTCTGGACCTCACAGAGGCTAGAGATAACA
GGTTCTCAGTCTCGGGAATTCCAGGCACTACTGGACATCGCAGAAGAGCT
GAGAAGAAAGTGGGGGCCCTGGAGGTGGCTCAGTCATGCCCAGGCCCGAA
GGGAGGAGAGGGCAGTGAGAGAGGGGGTGGCTGGGTGGTTCCCACACAGG
TGAGAATCCTTGGTCTGTTCTGTTGCTAGAGTGCATGATGCTGCTCTTTA
GGGTGAAACCTGTCTCATCTTTTCAGCAGGGNAGGCCTTGATGGTCAGAG
ACAGCCTATGGTTTTAGAGCTTTATTTGAGAAATGCGGGGAGAAAGAGAG
AAGGTGAAAAAAAGAGAAAGAAAGGAGGGTTTTAAAGAAACTAAAAAAGG
GGGAGCTTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGGAGATAGCACCCTTGACACCT
ACTCAGAAGTAAACAGCAAATAAAATAAATTTATGTCATTAATTTACATT
TGATACACCAATTTAACAAATGTATCTAGGAATCTAAGTAACAAAGTGGA
AATACTATTTCATAGTATAAATAAAAATATGATAAATACTGAAGTCAGGA
CTGAAAGAAGAAAAGATATAGGGTTATAACCAGGAGACAAAATACCTGCT
TATCTTAGATTAAATGGGATCATAAATTGCTAGATTAGATTTGTTCTTTT
AATTTAGTTTATCAATAGTCATTTATCTACACATGTATATACTAGTTATT
GATGTATATACTAGAGAGATTACAGAACAAAGACATCATTTATTACTTAC
TTGTATTGATACTACAACAAAGATATTTCACAAAGGTCAGGGATATTATT
GTTCAGTTTCATGGTCTATCATGGAGATAGCAATGTGAGGTCGCTTATCA
CGTTTTATGCAGAGTTAGAATTCAGAGAGTAAAGAATACTTGTTCTAGGG
TTGCTTTCTACATTTTATTCATTCTGCAACCCTAATCCATGGAGCTATCA
CTTCTAGCAATAAACTATATATGTTCAATGATTTTCCAAAAAAAAAAATC
AAGGTGTACCATTTGGCTTTTAAAACCCTGCCCCTTAAAAAATGGATTTT
TCAAATGGAGCTAGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_a17.b1 MSMg01no454_a17.b1 CHROMAT_FILE:
MSMg01no454_a17.b1 PHD_FILE: MSMg01no454_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:07 2005
         (473 letters)



>mm_chr6_11056140_11057012
          Length = 873

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaatatgccaagttatgtctaaaatacagagcaatgtctaattcagaggcaaa 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaattctgaataggcaaagttatgtctaaaatacagagcaatgtctaattcagaggcaaa 285

                                                                       
Query: 65  acagcctctccatctttcagtgatagtctctataccttttaagtatttagaattcatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acagcctctccatctttcagtgatagtctctataccttttaagtatttagaattcatcag 225

                                                                       
Query: 125 tatggctaaggttctatgcaggcagtgggcatgggggagtaaagggagtgagagaaaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tatggctaaggttctatgcaggcagtgggcatgggggagtaaagggagtgagagaaaacc 165

                                                                       
Query: 185 cacatcctgccagagttccagtgttctgggtgggcagacgtagaggacttccacaaggtt 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 164 cacatcctgccagagttccagtgctctgggtgggcagacgtagaggacttccacaaggtt 105

                                                                       
Query: 245 tctatgtggcccctggtgggtgtctttctgtgggaagctacagacctagcccacgggggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tctatgtggcccctggtgggtgtctttctgtgggaagctacagacctagcccacgggggt 45

                                                       
Query: 305 ggacaaggggatgtcctagatttctggacctcacagaggctaga 348
           ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44  ggacaaggggatgtcctagatttctgggcctcacagaggctaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no454_a17.g1 MSMg01no454_a17.g1 CHROMAT_FILE:
MSMg01no454_a17.g1 PHD_FILE: MSMg01no454_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:07 2005
         (475 letters)



>mm_chr6_11032568_11033442
          Length = 875

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggagatagcacccttgacacctactcagaagtaaacagcaaataaaataaatttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ataggagatagcacccttgacacctactcagaagtaaacagcaaataaaataaatttata 260

                                                                       
Query: 61  tcattaatttacatttgatacaccaatttaacaaatgtatctaggaatctaagtaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattaatttacatttgatacaccaatttaacaaatgtatctaggaatctaagtaacaaa 320

                                                                       
Query: 121 gtggaaatactatttcatagtataaataaaaatatgataaatactgaagtcaggactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaaatactatttcatagtataaataaaaatatgataaatactgaagtcaggactgaa 380

                                                                       
Query: 181 agaagaaaagatatagggttataaccaggagacaaaatacctgcttatcttagattaaat 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagaaaagatatagggttataaccaggagacaaaatacctgcttatcttagattaaat 440

                                                                       
Query: 241 gggatcataaattgctagattagatttgttcttttaatttagtttatcaatagtcattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatcataaattgctagattagatttgttcttttaatttagtttatcaatagtcattta 500

                                                                       
Query: 301 tctacacatgtatatactagttattgatgtatatactagagagattacagaacaaagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctacacatgtatatactagttattgatgtatatactagagagattacagaacaaagaca 560

                                                                       
Query: 361 tcatttattacttacttgtattgatactacaacaaagatatttcacaaaggtcagggata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatttattacttacttgtattgatactacaacaaagatatttcacaaaggtcagggata 620

                                                                  
Query: 421 ttattgttcagtttcatggtctatcatggagatagcaatgtgaggtcgcttatca 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttattgttcagtttcatggtctatcatggagatagcaatgtgaggtcgcttatca 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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