BAC Information

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BAC

Clone NameMSMg01-454B11
Chromosome6 (Build37)
Map Location 54,333,933 - 54,334,166
singlet/doubletsinglet
Overlap genenone
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926
Downstream geneWipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454B11.T7 (MSMg01no454_b11.b1)MSMg01-454B11.TJ (MSMg01no454_b11.g1)
ACCAG540950AG540951
length696743
length of high quality
(start - end)
---235 (80 - 314)
definitionCHROMAT_FILE: MSMg01no454_b11.b1 PHD_FILE: MSMg01no454_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:10 2005CHROMAT_FILE: MSMg01no454_b11.g1 PHD_FILE: MSMg01no454_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAAATNNNNNCCNANANAANNCCTTTTTCAAACATCCNNNAATCCC
TATTTCCCACACACTTAAGCAANATGNTTCCTGACTTGCCCCCTAAGTGC
CCCCCCCCATTAGCACACCTTGTCTTCCTGTGATTCTGTCATGGTTTTTC
AGGCTCTTGNNCTCANANAATATGGAAATTTAAGACCGNCNAANNNNAGA
ACCAAAGACCTAAGNCTTTATTTAAAAAAACAAGCTCCTTAATTTTAAAA
AAACCCCAACCAAGGCCCAAAACCCTTTTATATTTACCCGTTTCCACAAA
AAAACCAAATCTTTTTTTCCTTAAACCCCCCCAAAAACCCCCATTTTTTC
GGAAAAAAAAAAAAAAAAAAAAAAACCNCCTAAAAAAAAAAAAAAACCCC
CCCCCCGAAAACACCCCCAATATTAATTCCCCTTTAAAATTTTTTCCCCC
NNCCCCTTTNNTNTCCTCTTCTCTCTTCTCCCAAAAAAATCCCCACCCAT
TCCCCCTTTTACCACCCAAAACCACCCCCACCAAAACCCCTTCNCTCCCC
CCCCTCCCCCCCCCCCTACACACACCCCCCCCCCCCCCNTTTCCCCCTCT
TTTCTTTTTTATTACCAAAACTCCTTCTCTCTCCNCCCCTCCCCCTCCAA
CTCCCCCCTTTTTTTTATCTCCACCTCTTTTTATTTTTTATTTTTG
CCCCCTTCGATGATGTGGGAGGCCTGGNGGNCGCCTGTTTCACAACTGGG
GGTNGAACTATAGAATGACAAAAAGAATTCTCATGGACTCTGGCCTTTGT
TGTATCTACCTTGCTCCCCACTTTAATTCCCGATTGGTCAATAAATGGCT
GGAGCTTATGACTGGTCCGAAGGATCGGAAGGGGGGCCTTAGAATAGTGT
GTGTGTGGAGGGGTGGGTCTCAGGAGAGACAACAAGGAGAAGGAGAGAGT
TTTTCAGAGAGTAAGGGGGTTGCCGTTAGACTTGATGGAACAGGAGCATG
TGACTAAGAGAAGCCTTCCTTAGTTCTGGCTGATGAGCAAAAGCAGCCCA
GGAGAGATCAGTGTCTGGCATTGAGGGGGTTTTAACCAGTGGAGGGAACT
GCCCAGCTCAATGCCAGCAGCTTTTAAATAAATTACAATGTTTCTGTGTC
ATCTACGAGAAACAAGAAGTGGGGTATATACGCCTCTAGACATTCAGGAG
TCAGAGGGGTTATACTAATCCCCCAGAAATATAAATACTCCCATAGATGG
TCCATTACTTCCTTTTTCCAAGCGATAGAAACTATTCTGTGTGTGCCTCC
CCTAGTTCCATCCCCCTCCGAATTATTTCTGGACAATTTACTCCGGGTTT
TTTTCTCTTTTTTCATTTACCCTCTCTTTCCAACCATTTTTCCCCCCCCT
TCCTCATCCTTTTCTTTCTCTCTTCCCTTTCTTTTTAAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_b11.g1 MSMg01no454_b11.g1 CHROMAT_FILE:
MSMg01no454_b11.g1 PHD_FILE: MSMg01no454_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:10 2005
         (235 letters)



>mm_chr6_54333640_54334273
          Length = 634

 Score =  342 bits (177), Expect = 8e-99
 Identities = 220/239 (92%), Gaps = 9/239 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatggactctggcctttgttgtatctaccttgctccccactttaattcccgattggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 527 ctcatggactctggcctttgttgtatctaccttgctccccactttaattcctgattggtc 468

                                                                       
Query: 61  aataaatggctggagcttatgactggtccgaaggatcggaaggggggccttagaatagtg 120
           ||||||||||||||||||||| |||| ||||||||||||||||  |||||||||||||||
Sbjct: 467 aataaatggctggagcttatggctgggccgaaggatcggaaggcaggccttagaatagtg 408

                                                                       
Query: 121 tgtgtgtggaggggtgggtctcaggagagacaacaaggagaaggagagagttttt----c 176
           |||||||||||||||||||||| |||||||||||||||||||||||||||         |
Sbjct: 407 tgtgtgtggaggggtgggtctcgggagagacaacaaggagaaggagagag-----acgac 353

                                                                      
Query: 177 agagagtaagggggttgccgttagacttgatggaacaggagcatgtgactaagagaagc 235
           | ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acagagtaaggaggttgctattagacttgatggaacaggagcatgtgactaagagaagc 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space:   141250
Effective search space used:   141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)