BAC Information

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BAC

Clone NameMSMg01-454C16
Chromosome6 (Build37)
Map Location 39,711,530 - 39,712,033
singlet/doubletsinglet
Overlap genenone
Upstream geneHipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Downstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454C16.T7 (MSMg01no454_c16.b1)MSMg01-454C16.TJ (MSMg01no454_c16.g1)
ACCAG541007AG541008
length750751
length of high quality
(start - end)
507 (103 - 609)444 (73 - 516)
definitionCHROMAT_FILE: MSMg01no454_c16.b1 PHD_FILE: MSMg01no454_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:16 2005CHROMAT_FILE: MSMg01no454_c16.g1 PHD_FILE: MSMg01no454_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCCAGGATTTGCAGAGCTACACAGAGGAACCCTGTCTCNNNNNNNNNAA
AAAAAAAAAAAAATTTAAAAAAAAGGACAGAAGCATCCACATCTTGGATT
TTCCTTCTTCTTGAGCTTCATATGGTCTGTGAGTTGAATCTTGGGTATTC
CGACCTTTTTGCCTAATATATCCACTTATCAGTGAGTGCATACTATGTGT
CAACTCTTGTTTTTAAAACAGATATTTTTAAACACCAACCACATGGTTGT
CAGCCATCTTTACTAATTTTAAAGGGTACGTGCCACGTGACTTCCCTATC
TTAAGATGACCACATGGTATAAAGGAACAATTATAAAATTTCTCAGTCCT
ACTGAGGACTTAGTTTGTCACTGTACCTCTTTTTAGACAAAGGGAACATC
CAAGTCTCCAAATTATTTTGCATTGGTATGGATTTTTCTATGATTAACAA
GAGCCCACTTAGAGATTTCAACCTAAATACTTATGCCTTTGCTAACTGCA
TCAATTTATAAACTCCTAAGGTCTATAAAGGAAATAAAACTTGAGACATG
TGATTCATGTAATTTATGTCCAATAGCCCAAAGAGTTGCTTGTGAACTTT
GAAACCTTGGGGCCGACGATTTATTACAACAGGCCCGTATTTGGCCGGGC
AGGCCCGGCCCTCATTTGTCTTTGACTGGCCTAATGCCTTCCTATCCCCC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGACCTTTGGAAGAGCAGTCAGTGCTC
TTACCTGCTGAGCCATCTCACCAGCCCTTGTTTTGTTTTAATATTGTTTA
TTTGTGGGTGTGTGCACAGGCCTGCAGGTACCCATGAAGGTTGAAAGGTG
GTGTTGGAGTTACAGGCAATTGGAATCCATCAGACGCAGATACTATTACC
CAGACTCTGGTCCTCTGAAAGAGCACCAAGTGCTCTTAAGTATGGAGCCA
TTTATCCAGCCTTTGCTTTTTTTTTGAGAGCAGGAATCACTCTGTAGCCC
AGGATGGCCTGAAACTCACAGCAATCCTCTTGTTCAGCCTCTTGAGTCCT
GGGATGCGGCCATGAGTCACCAAGTTCAGCCTGGTCAGGCTTTCAGAACA
GGTAAATCACAGGTCTCCCGGGCAGCGGAACTACTACTGCCTGTAGCGCA
TTTGATCTGGAGGGATCTTGGAGATAGGTGCACCCATACTTCCCAGACAT
AGTGAAACGGGATTGTCCCTGCAGTGTTAATACAAGTCTAGAATCTGGGG
AGGGTTATTTTTAGGTTTTAGCCCTCACAAAAGGTGAAACTGGTTTTTTT
TTAAATCTGAAGCCAAGATGGATTCCTCCTCCATTTTGAGCATAATATAT
GGTCCCCTATTATTATTTCCTTTCCACGCCCCTTTATGTTTATCCCACCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_c16.b1 MSMg01no454_c16.b1 CHROMAT_FILE:
MSMg01no454_c16.b1 PHD_FILE: MSMg01no454_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:16 2005
         (507 letters)



>mm_chr6_39711215_39712121
          Length = 907

 Score =  919 bits (475), Expect = 0.0
 Identities = 498/507 (98%), Gaps = 3/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaaaaaatttaaaaaaaaggacagaagcatccacatcttggattttccttcttctt 60
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aaaaaaaaaaa---aaaaaaaaggacagaagcatccacatcttggattttccttcttctt 763

                                                                       
Query: 61  gagcttcatatggtctgtgagttgaatcttgggtattccgacctttttgcctaatatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gagcttcatatggtctgtgagttgaatcttgggtattccgacctttttgcctaatatatc 703

                                                                       
Query: 121 cacttatcagtgagtgcatactatgtgtcaactcttgtttttaaaacagatatttttaaa 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cacttatcagtgagtgcatgctatgtgtcaactcttgtttttaaaacagatatttttaaa 643

                                                                       
Query: 181 caccaaccacatggttgtcagccatctttactaattttaaagggtacgtgccacgtgact 240
           ||||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||
Sbjct: 642 caccaaccacatggttgtcagccatgtttactaaggttaaagggtacgtgccgcgtgact 583

                                                                       
Query: 241 tccctatcttaagatgaccacatggtataaaggaacaattataaaatttctcagtcctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tccctatcttaagatgaccacatggtataaaggaacaattataaaatttctcagtcctac 523

                                                                       
Query: 301 tgaggacttagtttgtcactgtacctctttttagacaaagggaacatccaagtctccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaggacttagtttgtcactgtacctctttttagacaaagggaacatccaagtctccaaa 463

                                                                       
Query: 361 ttattttgcattggtatggatttttctatgattaacaagagcccacttagagatttcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttattttgcattggtatggatttttctatgattaacaagagcccacttagagatttcaac 403

                                                                       
Query: 421 ctaaatacttatgcctttgctaactgcatcaatttataaactcctaaggtctataaagga 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctaaatacttatacctttgctaactgcatcaatttataaactcctaaggtctataaagga 343

                                      
Query: 481 aataaaacttgagacatgtgattcatg 507
           |||||||||||||||||||||||||||
Sbjct: 342 aataaaacttgagacatgtgattcatg 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)