BAC Information

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BAC

Clone NameMSMg01-454D09
Chromosome6 (Build37)
Map Location 139,822,540 - 139,822,763
singlet/doubletsinglet
Overlap genePik3c2g
Upstream geneEG632971, LOC100043898
Downstream genePlcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454D09.T7 (MSMg01no454_d09.b1)MSMg01-454D09.TJ (MSMg01no454_d09.g1)
ACCAG541041AG541042
length1,403769
length of high quality
(start - end)
---240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no454_d09.b1 PHD_FILE: MSMg01no454_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:20 2005CHROMAT_FILE: MSMg01no454_d09.g1 PHD_FILE: MSMg01no454_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAGGAGTAATATATGATAANACAGAGAAAAACCAAACTAGCATATCCAT
CATCTTCACCACACAGAGTGGGCGAGGGAAGGAGTCTACCGGCAATGTAT
ACCCCACATCACGACGGCGATCATATATATACTGCGCTTGTCTCTCTTAT
CGATCTCCCGTTATATTGTGTTCCTCGCGCGACGACCACCAACACCCGCG
CCTATTATCCGTTATTTCTCTTGGTATTGTCTCCGACAGAAACATATTAT
ACTTAGTGCGCAGCAATGCGGAGTGAGTTGTGGGAGGACGCGCCGCCATA
AGATTATTACATGCGCGCGGAGCGGTCTCACACCCACCACACATTATAGC
AACGACCGCGGACAGAGAATAGCACACATCAACACAAATTATCATAATAT
ATATGATCCTCTCTACATACGTCGTGACGTCGCGCACAGACCATCACCGC
AATATGGTTCTATTGCTATCTCCGCCGCTCCTACCACTATCGCAACACCC
GTTCGATGTCATATACCATAACATAAATAGCTCATGTGATTCCACCCTCT
GCTGTCAGTCTATGTGCCTATTATCGACCAATTCAATCATATCGCCGAAT
CAATCATACAATTTNTGTGCGTATGAGATAGAGATTAGCTGTATATACTA
CAGATAGACATCCGATATCCCGCGTATATTGTGTAGAAACTTTATTATTA
TAACTACTGACATGTGAGTCGCACATCATCTGATTCAGCTATATATCTGA
CATCGCGCATAATTATATTTTATATCACTATATGTTGCAGNCGGGCCCGG
AGGTAGTAGAGTATTAGACCAGTAGTGATTCATGAAGAATNAGTGTCTCT
ANTATTCACTTCTCGGTTGCACGCGAGCATACGCACGCATTTAGTCATCG
TTGGACGGTCGGCGCTAATGAGACTAATTACCGATCTAGATAGATGGTAG
TACACACAGCAGACCTCGCGACATACCATCAGTCATAATCTCGCAATTCT
GCGCGCTTACAACATACACACCGATGTTATTGTAGACATACTCATGCCGT
GCCTCGTGGGCTATGACTATCACCTTCTGCGTATATAATGCGGCGCTGTT
ACGCTTGCATGTGGTACACGCCTCCTNATATGCCTCCACAGTAGATGCTC
TATTACCCGCACCTTATCATTACGCCTACCGCCGCTCCGCACGCCGTTGA
TTGTCTCGCCGAGCTTCGATCTAGTATGAGTTCAGTTATTTGACAATGGA
CCTCCGAGATCATACTCTATCATCACTACGAGTTAGCGTAGCAACACGCT
TCTACGCTACACGACTCATCTACACATAGCACCACCGCGATAATGTTATA
TGAGGCGCGGCTCGGGCGCGGAGCGACGCGAGACATACCGTATCATACAT
ACN
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACTGATATGACTTAACTAGACCTT
TCTGAAGTATGGGACTCAAATGGAAAAGCCACGCAAGCACACTTGAGGAA
GTAGATTCTAGCTACCAGCCAAGCAGTTTCTAAAACAGTGTTTGGTTGTG
GTTGTTTTAAAATGTTAATTTAAAGCTGGGCACTGTGGTTCACACGATTT
AATCCCAGCATATCAGTGGCTACACAGACTATGAGTTTGAGACCAGCCAG
GTTAGCCTGGTCTCTGATGNTTTGTCCTGTCCCAAAGTGAAATAATAAAA
TTTATATGTTACAATACATGCTTATTATCAAAAGTGGTCAGAATAACAAG
AAGCATTCCCTTGGCTTTGATTTCTTTGCACAGTAACGTATTCAATAAAC
TCTGTTGCGTTCCACACCAAGCAGAAGCTCTCGGGCGCCAGCTTCGATGC
CTCATACTTTGATCACTGGTTTTGCTATTGGCCTTGGTGGGTTTCCCACT
CATCCCGTGATACCCTTTTTGGGCTGGGCTTTTTTTTTGGCTGGGACTAG
AAATGTTGGTAACACTTATCTATATCTCTTTGCCCTACCCTCGAATGTTT
TTTTTTCTCCCTTACCCTCCGGGGCAAAAGGGGCCGCCTTTTTATCCCCC
GCTTTCCCTCCTCTTTTTAACCCCCCTCTTTCATATCGTTTATTCCCTCC
CCTTTTTTTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_d09.g1 MSMg01no454_d09.g1 CHROMAT_FILE:
MSMg01no454_d09.g1 PHD_FILE: MSMg01no454_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:20 2005
         (240 letters)



>mm_chr6_139822415_139823054
          Length = 640

 Score =  381 bits (197), Expect = e-110
 Identities = 218/227 (96%), Gaps = 6/227 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactgatatgacttaactagacctttctgaagtatgggactcaaatggaaaagccacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 ccactgatatgacttaactagacctttctgaagtatgggactcaaatggaaaagccatgc 290

                                                                       
Query: 61  aagcacacttgaggaagtagattctagctaccagccaagcagtttctaaaacagtgtttg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aagcacacttgaagaagtagattctagctaccagccaagcagtttctaaaacagtgtttg 230

                                                                       
Query: 121 gttgtggttgttttaaaatgttaatttaaagctgggcactgtggttcacac--g-attta 177
           | |||||||||||||||||||||||||||||||||||||||||||||||||  | |   |
Sbjct: 229 ggtgtggttgttttaaaatgttaatttaaagctgggcactgtggttcacaccagca---a 173

                                                          
Query: 178 atcccagcatatcagtggctacacagactatgagtttgagaccagcc 224
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atcccagcatatcagtggctacacagactatgagtttgagaccagcc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)