BAC Information

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BAC

Clone NameMSMg01-454E01
Chromosome6 (Build37)
Map Location 134,083,306 - 134,268,841
singlet/doubletdoublet
Overlap geneEtv6, LOC100043660
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneBcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454E01.T7 (MSMg01no454_e01.b1)MSMg01-454E01.TJ (MSMg01no454_e01.g1)
ACCAG541073AG541074
length734772
length of high quality
(start - end)
558 (76 - 633)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no454_e01.b1 PHD_FILE: MSMg01no454_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:23 2005CHROMAT_FILE: MSMg01no454_e01.g1 PHD_FILE: MSMg01no454_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,083,306 - 134,083,861)(134,268,601 - 134,268,841)
sequence
ACCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCATTCCACGAATAAAACTTATTTGAAATTACCCTCTAAC
CATCTTTCCATGAGAACACCAGCGTTATTTCTTCCTCCCTTGATTCACAA
CACGTGTCGCCTGTATTTCCAGAAGGTATTTGATTAACAGTAGGCTCCAA
CCCAACCTCTCATCCTTTTTTAGGTCCTAGTGTAAGAATAAGTATGTGAA
TGGACCAGAGTGGTCCCCATAATTTACAGAAGCCCCCTGTTGAATAATTC
AGAAGAGGGAGATGCTCGTGGTATTAATAGTTCTGAGCTTTTGACCTTTC
TAGAATGGGCCTGGAAAGGAGCGGAGGGAAAGACGTTGTTTTCCTATACA
GCATGAATGAGTGAGGTGCTTTTACATGGAAGTTTCAAGTTCACAGGTTA
AAAATAAGCCCAATCAAATTGGTACCCTTCATTAGCCCTTCATGCTGTAG
GCAGCATTGGACGGGGGAGATGTAAATAATTTCAAATTCAGTAAGTTGTT
CTTATGGGAACATACATTTTAAGAGGTTTATATAATGGTTAGGGAAATGT
GCCTTTCATCCCTTGCCCTCAGCCGTTTCCAACTTTCCTCTCCCTTTCTG
AAGCTTATCGTTCCTTCTTCCCTCCTTGGGGATATTACAGTTGACCTCAG
AAATTATTATACTTCCCCCTTTGTCCAGCAGTTN
TAGCCAATGATATGGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTGCTTGCTTCCCAGGGTG
GAGAGTGTAGGTGGGTGCTATCACATGGGTTGTGAGGTACTTGGTTTGCT
ACATGGGTATGAAGAGCACTTTAATGATTGAGACGTCTCCCCAACCCCAA
GCCCAGTTCCCCTGAATGTGAGTTCCTCAACTCTTGTCCTCTAATTACAA
AATTATATATATTTAAAGTCAGTATCCATACTGGAGATGGAAAAACCTGA
AAAATGCTACTCTGCTGATTATTTCTACAGAGAACACCTCTAATTCCTTC
TCACAAGACTACTTTTGAGTTCTCAACTAATGGGTTTCATTATGGCATTC
TCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACATTCCA
TCTATAGTTTTTTTTCTTTTCATCCCCCTCGATTCCTGTGTTTCACTTTG
TTCCCCTACCCCCCTTTTTCCTCCCCCACTATCTTCCCACCTTGACTACA
CCACTCCCTTTTTCACATAACCTTCTATCTTCCACACACCTCCCCAGATT
CACCCCTTCTTCCCTCCATCTACTTCTCCTGTTTTCACTTACGCGACATA
CAGTTTTGACCCCACCCTATACGCCATTTATGCATCTAGCAACTCCTTTT
TGTTCTTGGCGTCTCCTACACTTACCTTGTTCTTAACTCATCCCGTCCAC
TTTATTTCGCTCTTTTTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_e01.b1 MSMg01no454_e01.b1 CHROMAT_FILE:
MSMg01no454_e01.b1 PHD_FILE: MSMg01no454_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:23 2005
         (558 letters)



>mm_chr6_134083106_134084063
          Length = 958

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttatttgaaattaccctctaaccatctttccatgagaacaccagcgttatttcttcc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttatttgtaattaccctctaaccatctttccatgagaacaccagcgttatttcttcc 260

                                                                       
Query: 61  tcccttgattcacaacacgtgtcgcctgtatttccagaaggtatttgattaacagtaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttgattcacaacacgtgtcgcctgtatttccagaaggtatttgattaacagtaggc 320

                                                                       
Query: 121 tccaacccaacctctcatccttttttaggtcctagtgtaagaataagtatgtgaatggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaacccaacctctcatccttttttaggtcctagtgtaagaataagtatgtgaatggac 380

                                                                       
Query: 181 cagagtggtccccataatttacagaagccccctgttgaataattcagaagagggagatgc 240
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cagagtggcccccataatttacagaagccccctattgaataattcagaagagggagatgc 440

                                                                       
Query: 241 tcgtggtattaatagttctgagcttttgacctttctagaatgggcctggaaaggagcgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgtggtattaatagttctgagcttttgacctttctagaatgggcctggaaaggagcgga 500

                                                                       
Query: 301 gggaaagacgttgttttcctatacagcatgaatgagtgaggtgcttttacatggaagttt 360
           ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gggaaagacgtcgttttcctgtacagcatgaatgagtgaggtgcttctacatggaagttt 560

                                                                       
Query: 361 caagttcacaggttaaaaataagcccaatcaaattggtacccttcattagcccttcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagttcacaggttaaaaataagcccaatcaaattggtacccttcattagcccttcatgc 620

                                                                       
Query: 421 tgtaggcagcattggacgggggagatgtaaataatttcaaattcagtaagttgttcttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaggcagcattggacgggggagatgtaaataatttcaaattcagtaagttgttcttat 680

                                                                       
Query: 481 gggaacatacattttaagaggtttatataatggttagggaaatgtgcctttcatcccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaacatacattttaagaggtttatataatggttagggaaatgtgcctttcatcccttg 740

                           
Query: 541 ccctcagccgtttcca 556
           ||||||||||||||||
Sbjct: 741 ccctcagccgtttcca 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no454_e01.g1 MSMg01no454_e01.g1 CHROMAT_FILE:
MSMg01no454_e01.g1 PHD_FILE: MSMg01no454_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:23 2005
         (241 letters)



>mm_chr6_134268401_134269041
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgtgcttgcttcccagggtggagagtgtaggtgggtgctatcacatgggttgtgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgtgcttgcttcccagggtggagagtgtaggtgggtgctatcacatgggttgtgagg 382

                                                                       
Query: 61  tacttggtttgctacatgggtatgaagagcactttaatgattgagacgtctccccaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttggtttgctacatgggtatgaagagcactttaatgattgagacgtctccccaaccc 322

                                                                       
Query: 121 caagcccagttcccctgaatgtgagttcctcaactcttgtcctctaattacaaaattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcccagttcccctgaatgtgagttcctcaactcttgtcctctaattacaaaattata 262

                                                                       
Query: 181 tatatttaaagtcagtatccatactggagatggaaaaacctgaaaaatgctactctgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatttaaagtcagtatccatactggagatggaaaaacctgaaaaatgctactctgctg 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)