BAC Information

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BAC

Clone NameMSMg01-454H02
Chromosome6 (Build37)
Map Location 88,138,514 - 88,138,840
singlet/doubletsinglet
Overlap genenone
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454H02.T7 (MSMg01no454_h02.b1)MSMg01-454H02.TJ (MSMg01no454_h02.g1)
ACCAG541218AG541219
length783758
length of high quality
(start - end)
213 (71 - 283)327 (79 - 405)
definitionCHROMAT_FILE: MSMg01no454_h02.b1 PHD_FILE: MSMg01no454_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:38 2005CHROMAT_FILE: MSMg01no454_h02.g1 PHD_FILE: MSMg01no454_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCATTATGTTTCTAGAGCATTTAAAAGGACATATGCGGCAAATAT
TCTGGAAGCTGGAGAGGATAGCCATGCCCATGTTTTTATTTTTTTATTTT
TATTTTTTAATTTTTTTTATTTTTTAAATTTTTTCATAGTCTTTATTCTT
ACAAACCCTTGTGTCGAGGGCTGACTTTCTTTTTTTTTTTTTTTAAAGAT
TTATTTATTTATTATGTGTAAGTACACTATAGCTGTCTTCAGACACTCTT
TATTAGGGTGTCAGTTTTTTTTTATGTTAGGCTTGTATCCATCTTGTGTC
TGTTGCTATTTTTTCTCCCCCCCCCCCTTACACCAAGTATTTGTTCTTCT
CTTCTTATTTCCCCTCCCCCCCTCCCGTTGTTCCCTTTTTTTTTCTTTTC
TTCCCTCTTTTTTCCCTCCTTTTTTCCTTCTTTTTTTTTCCTTTCCCTCC
TTTTTCTTTCGTTTTTTTTTCATTTATTTAGCTCACCCTTTCTCATTTTC
CTTTTTTTCCGCATATCAGACGCTTTTTATCATTTTTTTTACTCCCACTT
TACCTTACACTCCCGTCCTTCGTTATGTCATAAAGTTATTTTCCACGCTT
TTTTACTCTTCTCTGCTCCCCCCATTTTTCTTTTTTTTTCATTTTTCGTC
CTCCTTTCTTCCGCTTTCATTTCTTGTTTATCATCCCTCCCATTCTTTTT
CCCTTCTTTTTTTTTCTTTTCCTCCTCTTTTTC
NCTAGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCATCTTGCTCTCCTAGAG
AGGGTCCTGGGTAGCAGTGGGACCTGTGGCCCGAGTGGTACTTGAACCAC
AGGAAACCTCATTATTTAGGTTAATTAGACAGAGCAGCCCCAGCCTTGGT
GGTCCATTGCTGACTGTGGAGCTGGGACGGCACACTGCCAAAAGGAGTTT
AGCAGGCTCCATTCTGGGGCTTGGGGCTTGGGAGTAGCTCTGGCCAGGAG
TGCTGGGAGTTACCTTATTTTCTAGCAGTTTCCTCAGCACTGTCCTGGAA
GAGGAGCTGAGTGGTGGCTCCCCCATCTACAGACCTTCCCCTCCCACATG
GTCATCCACAGACCACGCCCCCTATCTTGGTAGCTTTATACAAGTTGCTT
TCCCACTCTGAGCCTCTGGCTCTGCCTCTGCAACTCTTCTTTCTAGGTTT
CTCTCTTTTTTTACCGTCTTTTTTTGTTGCTCCTCTTTTTCTTCCCCTCC
GTTTCTTCCCCTGCCTTGACCATTGTGTTCTCCCTGTCCCCCTTTGCGTA
CCGCCTTTTTTTCCCTTTCCATTCCCCTATCCTTTTACCCCCTTTCTCTA
TTTCTTTTTTGTTTTTTTTCCCCCTCTTTTTTTTTTTCTTCCTTGCGTTT
TTTCTCTTGTTCTTGTCCTTCTTCCCCCCCCCCTCTCTTTTTCCTTCTTT
CTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_h02.g1 MSMg01no454_h02.g1 CHROMAT_FILE:
MSMg01no454_h02.g1 PHD_FILE: MSMg01no454_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:38 2005
         (327 letters)



>mm_chr6_88138314_88139040
          Length = 727

 Score =  578 bits (299), Expect = e-169
 Identities = 320/327 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   accccatcttgctctcctagagagggtcctgggtagcagtgggacctgtggcccgagtgg 60
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 527 accccatcttgctctcctagagctggtcctgggtagcagtgggacctgtggcccgagtgg 468

                                                                       
Query: 61  tacttgaaccacaggaaacctcattatttaggttaattagacagagcagccccagccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tacttgaaccacaggaaacctcattatttaggttaattagacagagcagccccagccttg 408

                                                                       
Query: 121 gtggtccattgctgactgtggagctgggacggcacactgccaaaaggagtttagcaggct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 407 gtggtccattgctgactgtggagctgggacggcatactgccaaaaggagtttagcaggct 348

                                                                       
Query: 181 ccattctggggcttggggcttgggagtagctctggccaggagtgctgggagttaccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 347 ccattctggggcttggggcttgggagtagctctggccaggagtgctgggagttaccttaa 288

                                                                       
Query: 241 tttctagcagtttcctcagcactgtcctggaagaggagctgagtggtggctcccccatct 300
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 287 gttctagcagtttcctcagcactgtcctggaagaggagctgagtgggggctcccccatcc 228

                                      
Query: 301 acagaccttcccctcccacatggtcat 327
           |||||||||||||||||||||||||||
Sbjct: 227 acagaccttcccctcccacatggtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)