BAC Information

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BAC

Clone NameMSMg01-454K22
Chromosome6 (Build37)
Map Location 59,039,935 - 59,040,175
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
Downstream geneTigd2, Gprin3, EG634166, EG627108, EG434019, LOC671300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454K22.T7 (MSMg01no454_k22.b1)MSMg01-454K22.TJ (MSMg01no454_k22.g1)
ACCAG541401AG541402
length919773
length of high quality
(start - end)
---244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no454_k22.b1 PHD_FILE: MSMg01no454_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:57 2005CHROMAT_FILE: MSMg01no454_k22.g1 PHD_FILE: MSMg01no454_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGTTATCAATNNNNCCCCAGTTTCCGCNNNNNNTTCAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTATCCAGTAATCGCGGGAATTCCTTTTTGG
GATTTGCCCTAACCCCACTCCGGGATGGAAATCCCTCCCGGATTACTTCC
CATTTTGCCCTAAAGAATTTTCATAAAATTCCATTGGGTTTTTAAAAAAC
CTGAAAAAAAAAACTCCCATTGTGTGGAAAAGTGGAACCACATTTTTCTC
CATAATCCCATCCCCCCCCCGCGTTGAGCGGAAAACATCCGGAAATCTTC
TTTTTCAACTTTTCTGTGGCATAAATATATAAAAAAAAGGTGGGGGATAG
AATAACACTATTGGGTAATAATCCTGTGCCCCTTCATATTACCTCTGCGT
TTTTCTACTCCCCCCCTGTTGCATAAACACACGCCCCCCAAAATATATAT
ATTCTTTTTATACTCTCCCTTTTTTTCTTTCCCCACATTCCACTCTATTT
TATTCCGCTCTCGTTCCCTTATCTATTCCCACTCCCTCTCCCAAGGCGGC
TGCTATACATTTTATTTTTTCTTCCTTTCCCCCCCTCCTACATTATCTCC
TTCGACACCACTTCTCCCTTCCCTTTTTTACTCTCAATATACACCCCCCT
ACTTCTCATTTTTCTCACCATTATTTTTATTCTCTTATCTCACCCCTTTT
CTCCATTTCTCTCCTGGTCATTTTTTTAACCCCACTCCTCTCTCTTTCTC
CATTCTCCTTTTTCTTACCACCCTCTTATTATATATCTCTTACCTCATTT
TTTTACCCGCCACCTTTTTATTCCCTTACTCTGCCCCCTTATTTTTTTAC
GCCCGTTAACCCCCCAACTCTGTTCTTTTTCTTTCTTCTTCCTCTTCCTC
TCCCTTCTCTTTTTCCCTT
CGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCAGATTTTCTCTCTTCATTTTCAC
CTTGATGGCACAGTTTTAGATGGCAGTTTGTGAAGTGCGTTATGCTTGAA
GGCTTGTTTCCTAGGACTTAAAATCCACCTGTGAAAAGACCAAGATATAA
ACTTTAAAAAATGTCCTGTGATATTATGGGGGTGTTTGTTAGCCCTTGTT
TAGGCTTTGGTTCTAGCTGGAGAGAGTGTAAGGGAAAACTGGACCAAGGA
GGGTGATGAGACATTTATTTTTATTGAACAATCTAAGCACTCAGCTGAGT
TGTGCACATACCTACAGGATGTTGTACCCAAAGGTAGCACAGAGAAGAGA
AAATCTGGTCTAATCCACTGAGTGATGTTCACGGTCTTACTCTCTCTGGC
TTACTCAGTTCGCTTTCCTATATATTTTCATGTTCCCCCTTTTCTTAATA
ACTCTTTCTATTGTGGATTCTCACTTACCCCTTTTTCCACTGGTCCCCGA
ATTTCCTTTTTCATTTGTCCCCCCGCCCCCCCCCATGTTATTTATTTTCC
CTTTTTTTACCTTTCTTTTTATATCCTCTCACCCGTCCCCTTATTTTCTC
TACCTTTTCTTCACCCTTCATTTACCGCTCCTCACTTTTTTTCCACCTTC
TATTCCCCCGTTCACCCGCAACTAGTTTCTTTTATTCCTTTTCCCCCCCC
CCTTTTTCTTTTTTCCCCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_k22.g1 MSMg01no454_k22.g1 CHROMAT_FILE:
MSMg01no454_k22.g1 PHD_FILE: MSMg01no454_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:57 2005
         (244 letters)



>mm_chr6_59039733_59040376
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cagattttctctcttcattttcaccttgatggcacagttttagatggcagtttgtgaagt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cagattttctctcttcattttcaccttgatggcacagttttagatggcagtttgtgaagt 262

                                                                       
Query: 63  gcgttatgcttgaaggcttgtttcctaggacttaaaatccacctgtgaaaagaccaagat 122
           || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 gcattatgctagaaggcttgtttcctaggacttaaaatccacctgtgaaaacaccaagat 322

                                                                       
Query: 123 ataaactttaaaaaatgtcctgtgatattatgggggtgtttgttagcccttgtttaggct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataaactttaaaaaatgtcctgtgatattatgggggtgtttgttagcccttgtttaggct 382

                                                                       
Query: 183 ttggttctagctggagagagtgtaagggaaaactggaccaaggagggtgatgagacattt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttggttctagctggagagagtgtaagggaaaactggaccaaggagggtgatgagacattt 442

            
Query: 243 a 243
           |
Sbjct: 443 a 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)