Query= MSMg01no454_l15.b1 MSMg01no454_l15.b1 CHROMAT_FILE:
MSMg01no454_l15.b1 PHD_FILE: MSMg01no454_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:01 2005
(501 letters)
>mm_chr6_90891282_90892182
Length = 901
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%)
Strand = Plus / Plus
Query: 2 gcggaattccctggattccctgccacccactgagaggctctggctcataccacagataga 61
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcggaattccctggaaaccctgccacccactgagaggctctggctcataccacagataga 261
Query: 62 agaagttcagccttgacctggttgtgcctccaggcaggctgcagccctgcacagcactgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaagttcagccttgacctggttgtgcctccaggcaggctgcagccctgcacagcactgg 321
Query: 122 tatgcaggaaccagctcagggcttggggccattatctgagtccaagtctcctattctgga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatgcaggaaccagctcagggcttggggccattatctgagtccaagtctcctattctgga 381
Query: 182 tgggcctgaagaaggtaggaaaatataggtttggcaaagttaaagaaacctcatgtttag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgggcctgaagaaggtaggaaaatataggtttggcaaagttaaagaaacctcatgtttag 441
Query: 242 taggctgtctattttccctaacacttaagattcaggaaaaagtaattccacaaatcctga 301
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggctgtctattctccctaacacttaagattcaggaaaaagtaattccacaaatcctga 501
Query: 302 gtcctcctggccattcagtgtctaagaagatcaaggtcactgccctcaaacttgggactt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtcctcctggccattcagtgtctaagaagatcaaggtcactgccctcaaacttgggactt 561
Query: 362 ggggggtatagtgaagggtggctgcagaatactgcatgattccccaacaacctcctttac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggggggtatagtgaagggtggctgcagaatactgcatgattccccaacaacctcctttac 621
Query: 422 agatccagagtggtataatgggtatcagtgactgggtgggaagtcagtgactaaaatggg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agatccagagtggtataatgggtatcagtgactgggtgggaagtcagtgactaaaatggg 681
Query: 482 cagagactgggatgatgaca 501
||||||||||||||||||||
Sbjct: 682 cagagactgggatgatgaca 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_l15.g1 MSMg01no454_l15.g1 CHROMAT_FILE:
MSMg01no454_l15.g1 PHD_FILE: MSMg01no454_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:01 2005
(466 letters)
>mm_chr6_90951806_90952670
Length = 865
Score = 826 bits (427), Expect = 0.0
Identities = 456/475 (96%), Gaps = 17/475 (3%)
Strand = Plus / Minus
Query: 1 attcacacattttgtgacttgtcacattttgaaacataactgtaatcattaaagtgatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attcacacattttgtgacttgtcacattttgaaacataactgtaatcattaaagtgatag 421
Query: 61 aagtgacattcaggaccatccgtgatattgtcccagtgccaaggtgtgtagttgcatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagtgacattcaggaccatccgtgatattgtcccagtgccaaggtgtgtagttgcatgga 361
Query: 121 tggaaccctgtctcctccccaccatctttgctttctccctggcttcctaccattagaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 360 tggaaccctgtctcctccccaccatctttgctttctccctggcttcctacccttagaggc 301
Query: 181 ctcccctaccctgcttgcctgaaccaattccccacaggtcaaagaacaactgctcaaacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctcccctaccctgcttgcctgaaccaattccccacaggtcaaagaacaactgctcaaacg 241
Query: 241 aatgtg----ttttttgtgtttgaagggtcaggtagagacctcg--------gctcactt 288
|||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 240 aatgtgggcc-----tgggtttgaagggtcaggtagagacctcgggccaacagctcactt 186
Query: 289 gtatctaagccctcattcccttggctgcagagtgggacgatgggacatcccatgcagtgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtatctaagccctcattcccttggctgcagagtgggacgatgggacatcccatgcagtgg 126
Query: 349 tacttagaaatattaaatgctatcactcacatgtgctgagtaccttgtaattacccaccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tacttagaaatattaaatgctatcactcacatgtgctgagtaccttgtaattacccaccc 66
Query: 409 actgctaggtcaacttctactccagagctaacattccggttgaagtgagggcgca 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 actgctaggtcaacttctactccagagctaacattccggttgaagtgagggcgca 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space: 389880
Effective search space used: 389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
