BAC Information

Click to search

BAC

Clone NameMSMg01-455A18
Chromosome6 (Build37)
Map Location 81,374,129 - 81,374,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A18.T7 (MSMg01no455_a18.b1)MSMg01-455A18.TJ (MSMg01no455_a18.g1)
ACCAG541679AG541680
length7341,609
length of high quality
(start - end)		687 (45 - 731)---
definitionCHROMAT_FILE: MSMg01no455_a18.b1 PHD_FILE: MSMg01no455_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:26 2005CHROMAT_FILE: MSMg01no455_a18.g1 PHD_FILE: MSMg01no455_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCGTTTGGAGTAGAAATTTTTAAATTTAAATTCTCATTCTTATGGT
TGAGTGGAAAATGTTTTAAATGTTAAAACCCATGTATATACTAGGTAATG
GTATATACGTATTCTAAAGTCTCTCTGTGTTAGTAACTGTTTACACATAA
AAACATCTGCTCCATGATCATGTAAGCTTGTGCTTTAAAGGGAGACTTCG
AACATACAATGGTTAAGATTAGTATTAGGAACCGGGCAGTAGTGGTGCAT
GCCTTAAATCCCATCACTTGGGAGGCAGAGGCAGGCTAATTTCTGAGTTC
GAGGCCAGCCTAATATACAGAGTGAGTTCCAGGACAGACAGGGCTACACA
GAGAAACCCTGTCTCAAAAAACAAAACAAAACAAAAAACAAACAAATAAA
CAAACAAACAAAAAGATTAGTATTAGGAATAAATAACAGATACCTATGAA
TTTTGTCTTTAATAAAATAAGACCACTTCTGTCACATGGTCAAGTCCAGG
GATTAGCAATCAATGGCAGATAAAGGACATTCCAGCCTGGTATACAAAGT
GAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACC
AACATTCCAGAGAAAAAGGGACATTTCTCTGAACCCACATTGCTTCCAAT
TTTGATCTCTCAACCTAAGTTGCCATTAGCTTGG

ATATATATCAGCAGAAGAGATTTGTGTAGTGTGCGGCGTGCGTCCGCGGG
CGCCTCACCCGCCACTGTGATGTAAGAACTAGCCTCACCACACTGCCATT
ACGTAACCGCCGCGCGCAGGATGCGAGATACATAGACCAACCAAATTCCT
GTGGTGTGCCGCGCCCGCGATGTCGCTAACTCTATGCATCTGAATACCGG
TGGTTCTTGGCTATCCTNTGAGCGCGATAATGCTCGCAGCGCGTATATAG
TAGTAATNTGTGTGTCGTACATACATGCTCCTGCCTATCTTGCATACGTC
CTTCTATCTGGTTGCCGGTACGCTAGAGTGTGGTGCCCGCGACGTAACGC
TAGACGTGTCGTGAAGTAGACAAGTGACAGAGATATGTTACCTGCGCTAT
ACTGCAACGCGACACAGCNACTTAACGCACGTTCCTCACGNTAATAGTGA
ATGAAGTGAGTTGATGCGTGCGTATTTGCTGGACCTCGATCAGTTGCTAT
ACGCCCACACGGTTATCTGGCATTATGCCTCGATATCATGAATCATGCAT
ATTATATTAATATAGCTGCCCGTAGCCTCCTCTCCAGGAGAGCGCTGTTG
GCGACCCCGCCGCACCCACGACGCTCACCATATCTCACGACACACTATCA
TCTGTGTATTATCGATGATGAATTCGTATATCACCCCGCGCTGTGAGGGG
CACGCAGGAAANCACATACAACAGAGANAGAGAAGATATATGAAGCGTGA
TCGACGAGACATCACTAAAAGCATTATGAGACGAATATACACNTACTCGC
TCACGCACATACGTAATGATAACAAGACGCAAGCATACCAATATAAGACG
TGCCGTCATACCTGTATTATCTATATATTGAGTCGTTGATATGTATACAT
CACAGCGCCGTGGCTCACCTACGATCATCGTACACTACTATTAAATCAGA
CATTCACGCATCTCTCCATATGCGCGCTGTAGACNGCGCACCGGATNTAA
AGAGCTNCGCGCNACTCCGATGTCTATCTATATTGNTCANACTCTCATCC
GCCCGCTACTCTCCTATTATATATGCTAGAATAACGCTTCAAGCATCTCA
CTCGTCTACTCGTCATGTTGTCACGTCAAATATTGCAATCACTATGTTAC
TATATACACGACTCCGACGCGCCGCTCTATTAGATAGTGATATATGTGCA
CCATATGTAGCACACGCCGGTCCACCCCTGCCCTCGTCGCAGTGATGAGT
TCGCTNCTCATTATGACATGTATGTCGTAACGTATGATCTGCGTTCGTCT
AGAGTGCACGCATGCGTCATCACGTCGCGACCATCTGCGGACTCTATTCT
ATCTATATATAGTGCCTCACATGAGTAGATACACTCTCNATATTCTCCGC
ACTATCTTATCCATCGCCGCTCGCCAGCGCAGATTATATATCTCTAATCA
CTCATCATTGACTACGCTCGCAGCTGCTGATCGCTGTCGTTCNACGAGTC
TCATTCTAAGGATAATAGTGACTGACTGTGTACCGTCGTGCCTCTGAATA
TCTCACTCTTATCTCTGTCTCCTCGTCTGTATCTGATCACTACTACCCTA
TCATCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a18.b1 MSMg01no455_a18.b1 CHROMAT_FILE:
MSMg01no455_a18.b1 PHD_FILE: MSMg01no455_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:26 2005
         (687 letters)



>mm_chr6_81373925_81375011
          Length = 1087

 Score = 1239 bits (641), Expect = 0.0
 Identities = 671/683 (98%), Gaps = 4/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccgtttggagtagaaatttttaaatttaaattctcattcttatggttgagtgga 64
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccgggtggagtagaaatttttaaatttaaattctcattcttatggttgagtgga 264

                                                                       
Query: 65  aaatgttttaaatgttaaaacccatgtatatactaggtaatggtatatacgtattctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgttttaaatgttaaaacccatgtatatactaggtaatggtatatacgtattctaaa 324

                                                                       
Query: 125 gtctctctgtgttagtaactgtttacacataaaaacatctgctccatgatcatgtaagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctctctgtgttagtaactgtttacacataaaaacatctgctccatgatcatgtaagct 384

                                                                       
Query: 185 tgtgctttaaagggagacttcgaacatacaatggttaagattagtattaggaaccgggca 244
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 cgtgctttaaagggagacttcgaatatacaatggttaagattagtattaggaaccgggca 444

                                                                       
Query: 245 gtagtggtgcatgccttaaatcccatcacttgggaggcagaggcaggctaatttctgagt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gtagtggtgcatgccttaaatcccatcacttgggaggcagaggcaggctaatttctaagt 504

                                                                       
Query: 305 tcgaggccagcctaatatacagagtgagttccaggacagacagggctacacagagaaacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcgaggccagcctaatatacagagtgagttccaggacagacagggctacacagagaaacc 564

                                                                       
Query: 365 ctgtctcaaaaaacaaaacaaaacaaaaaacaaacaaataaacaaacaaacaaaaagatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 565 ctgtctcaaaaaacaaaacaaaacaaaaaacaaacaaataaacaaacaaa----aagatt 620

                                                                       
Query: 425 agtattaggaataaataacagatacctatgaattttgtctttaataaaataagaccactt 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 agtattaggaataaataacagatacctatgaatttggtctttaataaaataagaccactt 680

                                                                       
Query: 485 ctgtcacatggtcaagtccagggattagcaatcaatggcagataaaggacattccagcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtcacatggtcaagtccagggattagcaatcaatggcagataaaggacattccagcct 740

                                                                       
Query: 545 ggtatacaaagtgagtttcaggacagccagggctatacagagaaaccctgtctcaaaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtatacaaagtgagtttcaggacagccagggctatacagagaaaccctgtctcaaaaaa 800

                                                                       
Query: 605 ccaacattccagagaaaaagggacatttctctgaacccacattgcttccaattttgatct 664
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccaacattccagagaaaaaaggacatttctctgaacccacattgcttccaattttgatct 860

                                  
Query: 665 ctcaacctaagttgccattagct 687
           ||||| |||||||||||||||||
Sbjct: 861 ctcaaactaagttgccattagct 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |