BAC Information

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BAC

Clone NameMSMg01-455D12
Chromosome6 (Build37)
Map Location 28,194,270 - 28,372,739
singlet/doubletdoublet
Overlap geneAA407452, LOC100041304, LOC384360, Gcc1
Upstream geneGrm8, 6530409C15Rik
Downstream geneArf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455D12.T7 (MSMg01no455_d12.b1)MSMg01-455D12.TJ (MSMg01no455_d12.g1)
ACCAG541810AG541811
length720704
length of high quality
(start - end)
602 (72 - 673)312 (299 - 610)
definitionCHROMAT_FILE: MSMg01no455_d12.b1 PHD_FILE: MSMg01no455_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:40 2005CHROMAT_FILE: MSMg01no455_d12.g1 PHD_FILE: MSMg01no455_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,194,270 - 28,194,871)(28,372,428 - 28,372,739)
sequence
ATCTAAATTTGCGGCGCTAAANGAATCATATTCATAGACGGATGCGCGGA
ATCTTTTTACCAAGACAACATATCAACTGGTGACCAAGGTCAGAACTGTC
AGACGTCTCCAAGTCAGCCTGTGATTCCTGAGGTTGCTCCTCAGTGGGAG
CTGCAGCTTCATCTACAACAGTCTCTATAGGAGGAGGCTCTATGGCCTCC
TCCACCTCTGTATCTGCGTCGGGGACTGCTTTCAGCTGTTCCGAGCTTGT
CTCCTGTATTTGAACTTCAGTTTGTTCAGGTGTACTGCTTGACTCGGTCA
CTTCAGCATGTTTATCAGTCCTTGAAATATATTGAAACACTGCATTTTGG
TTGGTTTCTATGGGTTCTAGCTTAACAATATATTCTCTCTTGTCCACTCT
TGGATATATGGCTTCTAGGAGATCACTTATGGCTTGGCTTTGTTTATCAT
TTACATCAGGAAGATCTGTTAAGAAAATAAAAATTGTTTTTAACCTGAAA
GAATTAACTTGTTCTCACCCTCTAATATTTTAAAATATATAATGAAACCT
CTTTTAGTCATATATGTATCTTTTTATAGCATTATCTACTTTCAGCATTT
TGTGAATATAAACCTAGTTATTAACTATATTANAACTTTGCTTTAATTTA
CCAAATGAGAAAGGTATAATCTAAAATGTCACTTCTGCTTCCAAGTTCCC
TTATTATAAAATACACAAGN
GGAGGCCGCCGGTCAACATATGTGAGGTGAACNANAGATTGCACAAAAGA
AGTCACTTTGTAGACCCGGCTCGCCTCGAACTCAGAAATCCACCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCTCCC
TCCCCACTTTTATTTCGTGTTCATGTGTGGAGGTGTAGCTCTCAGAGGAC
AACCTGTGGGAATATGTTCTCTCTTTCCACCGTGTGGGCCCTGGTGATAG
AACTCAGGTCAGATCATTGGGCCTGGGTGGAAAGTGCTTTTATTGTTGAG
TCGTCTTACAGTCCCCACAAGAGTCTTGATGTATAAGAAAAAGGAGACTT
GATGGTGTGCTCTTGAGATGAAAATCTTTTCATGTCTTGTCACCTAACGT
AAAATCTAAATGCCTTTAAGTTGGGTCCTTTGTTCCAGCCTCATCAGTAG
CCACCCTTCTCCCACACCATAAGCTTCCTGGGCAAGTTAGGCTCACTGAT
GCCTGACGTCCCTATACACCTTTCCACTTTCCTCCATGCTGGTTTCCCAC
ATCTGCATTGAGCTTGGCAGTCTACTCATCTCTCANACTTCAAATCATTT
CCCCTAAGAGTCTCTGTTCCGGCAGGTGCCTCATCTCCTTTATACCACTT
CCGCGATGGCTCGACACACTAGTGTGAAGGATGCCCGGACACACTAGTGT
GAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_d12.b1 MSMg01no455_d12.b1 CHROMAT_FILE:
MSMg01no455_d12.b1 PHD_FILE: MSMg01no455_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:40 2005
         (602 letters)



>mm_chr6_28194070_28195071
          Length = 1002

 Score = 1104 bits (571), Expect = 0.0
 Identities = 594/602 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaactggtgaccaaggtcagaactgtcagacgtctccaagtcagcctgtgattcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaactggtgaccaaggtcagaactgtcagacgtctccaagtcagcctgtgattcctga 260

                                                                       
Query: 61  ggttgctcctcagtgggagctgcagcttcatctacaacagtctctataggaggaggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggttgctcctcagtgggagctgcagcttcatctacaacagtctctatagaaggaggctct 320

                                                                       
Query: 121 atggcctcctccacctctgtatctgcgtcggggactgctttcagctgttccgagcttgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atggcctcctccacctctgtatctgcgtcggggactgctttcagctgttctgagcttgtc 380

                                                                       
Query: 181 tcctgtatttgaacttcagtttgttcaggtgtactgcttgactcggtcacttcagcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 381 tcctgtatttgaacttcagtttgttcaggtgtactgcttgactcggtcacttcagcaggg 440

                                                                       
Query: 241 ttatcagtccttgaaatatattgaaacactgcattttggttggtttctatgggttctagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatcagtccttgaaatatattgaaacactgcattttggttggtttctatgggttctagc 500

                                                                       
Query: 301 ttaacaatatattctctcttgtccactcttggatatatggcttctaggagatcacttatg 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaataatatattctctcttgtccactcttggatatatggcttctaggagatcacttatg 560

                                                                       
Query: 361 gcttggctttgtttatcatttacatcaggaagatctgttaagaaaataaaaattgttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttggctttgtttatcatttacatcaggaagatctgttaagaaaataaaaattgttttt 620

                                                                       
Query: 421 aacctgaaagaattaacttgttctcaccctctaatattttaaaatatataatgaaacctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctgaaagaattaacttgttctcaccctctaatattttaaaatatataatgaaacctc 680

                                                                       
Query: 481 ttttagtcatatatgtatctttttatagcattatctactttcagcattttgtgaatataa 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttagtcgtatatgtatctttttatagcattatctactttcagcattttgtgaatataa 740

                                                                       
Query: 541 acctagttattaactatattanaactttgctttaatttaccaaatgagaaaggtataatc 600
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 741 acctagttattaactatattaaaattttgctttaatttaccaaatgagaaaggtataatc 800

             
Query: 601 ta 602
           ||
Sbjct: 801 ta 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_d12.g1 MSMg01no455_d12.g1 CHROMAT_FILE:
MSMg01no455_d12.g1 PHD_FILE: MSMg01no455_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:40 2005
         (312 letters)



>mm_chr6_28372228_28372939
          Length = 712

 Score =  574 bits (297), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcgtcttacagtccccacaagagtcttgatgtataagaaaaaggagacttgatggtgt 60
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 512 agtcgtcttacagtccccacaagagtcttgatggaaaagaaaaaggagacttgatggtgt 453

                                                                       
Query: 61  gctcttgagatgaaaatcttttcatgtcttgtcacctaacgtaaaatctaaatgccttta 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 452 gctcttgagatgaaaatcttttcatgtcttgtcacctaaggtaaaatctaaatgccttta 393

                                                                       
Query: 121 agttgggtcctttgttccagcctcatcagtagccacccttctcccacaccataagcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agttgggtcctttgttccagcctcatcagtagccacccttctcccacaccataagcttcc 333

                                                                       
Query: 181 tgggcaagttaggctcactgatgcctgacgtccctatacacctttccactttcctccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgggcaagttaggctcactgatgcctgacgtccctatacacctttccactttcctccatg 273

                                                                       
Query: 241 ctggtttcccacatctgcattgagcttggcagtctactcatctctcanacttcaaatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 272 ctggtttcccacatctgcattgagcttggcagtctactcatctctcaaacttcaaatcat 213

                       
Query: 301 ttcccctaagag 312
           ||||||||||||
Sbjct: 212 ttcccctaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)