BAC Information

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BAC

Clone NameMSMg01-456A17
Chromosome6 (Build37)
Map Location 99,177,851 - 99,178,209
singlet/doubletsinglet
Overlap genenone
Upstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A17.T7 (MSMg01no456_a17.b1)MSMg01-456A17.TJ (MSMg01no456_a17.g1)
ACCAG542439AG542440
length731776
length of high quality
(start - end)
378 (64 - 441)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no456_a17.b1 PHD_FILE: MSMg01no456_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:43 2005CHROMAT_FILE: MSMg01no456_a17.g1 PHD_FILE: MSMg01no456_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATTTTGGGCCGCTATACGACTCTTATACCTAAGAGGATCCGCGGAAT
TCCCTTTCCCCATTGTTCTGGGTTAGTTAGCTTTCTGATTAGAATGACCA
AAATCCCCAAGAGGAAAAACCTATTTGGGCTCATGGATTCCAAGAGTGCG
CAGCTCATAGTTGCTTGGCTTCATGTACTTGGCCAGAGCATCTTGGTGCA
AGAGTCTGTCTGTCTGTCTGCCTTCCTTCTTTTCAAAAGATTTATTTACC
TATTTTATATGTGTGAGCACACTATCACTGTCTTCAGACACACAAGAAGA
GAACATCTATTTCGTATACCAGATGGTTACGAACCAACATGTGGTTGCTG
GGAATTGAACTGAGGACCTAGAGAAGAACAGTCAGTGCTCTTAACCCCTG
AGTCATCTCTCCAACCCTCAGGAGTTTCTTTACCTCATAGTAGAAAGGAA
GGAGCAGAGAGAAAGATAGAGACAGAAAGAGAGGGACAGAAGCAATTGCT
ACAGACCTGACTTCAGTGGCCTACTTCCTCCAATAAGGGTCTAGCTCCTA
AATTTTCTAGAACAATCTCACATTGCATCATTTGTTGGGGACCAAGCTTC
CAATGTGCGCTTTTGCATTGTGATGAATGCCCTTGATTTCTCAATCATAT
CTCGCTTTCTCCTAGATGCTGAGTCTCCTTCGATTATCACCAGCCATGGT
TATGTGATACCTTGGCCATGGCCCTGCGCGG
TCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGACAATCTGTTTCTCAAGCCCCGTGTGAGCCACT
TTCAGGCTTTAATCACTTAACCTTCATAATTACCTTTCGGTAGGCAGGGT
AACCAGCAATATTCTCTAGATGAGAAAATGGAAAGAAAGGGAGTTTAAGT
TACTTTCCTGGGGCCACACAGGAATAACTTGCTATCAGGACTCGATTTCT
CATTCTGACAAGGGCAGCCACACTATTAATAGTAGAACGCATCAACCTCC
TCGCTTCCAGATATTGTTATTTGTTAGTTCCAAAGCGCCATCCTACACAG
TTAAAGCAGGTAAACGGCAGAGTGTACTTTAGATCTGACCATAAGGAGAT
ATAGTGCTGGAAACAACCGCAACCGGCTCCAGCATTCTGAAGGATATTGG
GAAAACACACAAAGTATATACTGAACCTGGGGCAGGGTTTCCATAACTAT
TATGGAATCTTTTAAGCATCTCAGAGAAACATAACTATGCATTCCTAATA
CCAATATTTCATTTATTGTATTATCCCTTAATATCACCTCCAATATGTCA
TTACCTTTTCCCTTTGGGTTTGTTTATTTAAAATCTTGGTTTAGGGGCAA
ATCCTGGTTTTGTTTTCTTATGTCATTACCCCATGGGACCCTTGTGCCCT
TTTTTTGGATTTCCGTCTTTATGCCTTTGATTGTTTACCCTTATTTCCAC
CCCACGTGTCCCTTTTTACCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a17.b1 MSMg01no456_a17.b1 CHROMAT_FILE:
MSMg01no456_a17.b1 PHD_FILE: MSMg01no456_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:43 2005
         (378 letters)



>mm_chr6_99177851_99178628
          Length = 778

 Score =  596 bits (308), Expect = e-174
 Identities = 347/360 (96%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctgggttagttagctttctgattagaatgaccaaaatccccaagaggaaaaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgttctgggttagttagctttctgattagaatgaccaaaatccccaagaggaaaaaccta 300

                                                                       
Query: 61  tttgggctcatggattccaagagtgcgcagctcatagttgcttggcttcatgtacttggc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttgggctcatggtttccaagagtgcgcagctcatagttgcttggcttcatgtacttggc 240

                                                                       
Query: 121 cagagcatcttggtgcaagagtctgtctgtctgtctgccttccttcttttcaaaagattt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cagagcatcatggtgcaagagtctgtctgtctgtctgccttccttcttttcaaaagattt 180

                                                                       
Query: 181 atttacctattttatatgtgtgagcacactatcactgtcttcagacacacaagaagagaa 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 179 atttacctattttatgtgtgtgagcacactatcactgtcttcagacacacaagaagtgag 120

                                                                       
Query: 241 catctatttcgtataccagatggttacgaaccaacatgtggttgctgggaattgaactga 300
           ||||||   | ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 119 catctaaccc-tattccagatggttatgaaccaacatgtggttgctgggaattgaactga 61

                                                                       
Query: 301 ggacctagagaagaacagtcagtgctcttaacccctgagtcatctctccaaccctcagga 360
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ggacctagagaagggcagtcagtgctcttaacccctgagtcatctctccaaccctcagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)