BAC Information

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BAC

Clone NameMSMg01-456H17
Chromosome6 (Build37)
Map Location 33,779,525 - 33,779,771
singlet/doubletsinglet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H17.T7 (MSMg01no456_h17.b1)MSMg01-456H17.TJ (MSMg01no456_h17.g1)
ACCAG542774AG542775
length772808
length of high quality
(start - end)
244 (70 - 313)172 (75 - 246)
definitionCHROMAT_FILE: MSMg01no456_h17.b1 PHD_FILE: MSMg01no456_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:19 2005CHROMAT_FILE: MSMg01no456_h17.g1 PHD_FILE: MSMg01no456_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCTAAAGAGGATCCGCGG
AATTCATATTGGCCGGATACATCTACCTTCAGCAGTGGTGTAGGGGAAAG
TGTACATAGCAGAGAAGGCTCGGTATCTCACACCATATACAAGAGTGACG
TGTAGGTGGTTAAATCCTTCACGTGAGACACAGAACTACAAAGAGTATGT
GCTACAATTCCATGGTGTAGCTATACCAAAGAAGTTTTTTAGATTATATT
TTAGATTTTCCTACTCTAAAGTAGGAGAAATGAAAGCAAAAAAAAAATAG
ACAAATGGGAATATTTTTACAGAAAGCTCTGCACACTGAAATAAAGGAAT
GAGGAGCCAACCTACACTTGGGAGAAAATATTTCCAAGTCATACATTTTA
TTACTAGTTGGTAGAAAACCGTGTAGGAAACTTAACTCCATATTTTATTT
TGTTAAAAAACAAAAAAAACTAAATAACAGATCATATTAACAGTAGGTAA
AGAGTGTGAGGGCATAATTTGAGCGTATATTTAGCTTGTTAAAAACCGCT
AGATTCAAATTCTAAACCCCTTTACAAAATTCCTTATTTTTACATTCTTA
TCAGGTTTTGCACCTCAATTTTTTCCTACAGATTGTATTATTACTCTTTC
TGTTTTTTGTTCAAACTTCCTTCTTTATTTTTTTCTTTTCCTAACTTCCT
TAGTTACCCGGAATTTCGTCTTTCACTTTCGATCTCTTAAACTGCTGTTT
GTTATCCTCTCTATTCTACTTN
NCCCCGATGATGTGNTAGGCCTGGCGGNCGCCTGTTTTCAGACTGTGGGG
TGAACTATAGAATTTTCCGCGAAATTCTCGATGACAACCATGTAAGGAAG
CTTTCACCTGAACTTGGTGGACATGATGACTAGAGAGAAAAATGTCCCTC
AGAGGCTCATGTATTTAAATATCTAGTTCCCGGCTGTCGGTTGCTGTTGG
GGGAGGTTATGGGACTTTTAGGGAGTAGGNNCTAGNTGGAGGACGGTCAT
TTTTTTTTGTGGGCTCTGAGAGTTTGTAGCCTTGTCCCACTTCCATTTTA
CTCCCCCGGCNCCGGTTGGCTCCCTTTCGGAAACCGNCGGCCACACGGGC
GCGGGTTTTTTTTTTCCCTCCCCTTCCGCGTGGGGCTTCCACTACAGTCA
CTTTCCCCCCCAAACCCCCCTCTGGTTTTTTTTTTTTTTACCTTCTTCCT
TTTTGGACTCTCTTTTTTTTCCTTATTTTCTGCTCGCTTTTCATTTCCTC
CTATTTTTCTCTCACATTTTCGCCTCTTGTTTTCTGTACTTACCACGTCT
TCATTTCCGCCCACCCGCATCACATTGTTCGCTCCTTTTCTTCGCTTATA
TTTTTTCCCTTCCTTTATTTTCCTTTTTTTCGCCTTCCATCTCGTATTCC
CCTAGTTTCGCTTATTTTTTTTTTCTTTTTATCTGTATCTTGTGTTTCTC
GCTTCCCCTTGTATATTTATCTCCCCCTCTCCACCCGTTCTATCATTTCT
GATTAGTCTCCTCGCTATCAATCTTTTTTCCCCGCGCTTCTCCTTTTTCT
TATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h17.b1 MSMg01no456_h17.b1 CHROMAT_FILE:
MSMg01no456_h17.b1 PHD_FILE: MSMg01no456_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:19 2005
         (244 letters)



>mm_chr6_33779325_33779971
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 241/247 (97%), Gaps = 3/247 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctaccttcagcagtggtgtaggggaaagtgtacatagcagagaaggctcggtatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctaccttcagcagtggtgtaggggaaagtgtacatagcagagaaggctcggtatctc 260

                                                                       
Query: 61  acaccatatacaagagtgacgtgtaggtggttaaatccttcacgtgagacacagaactac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccatatacaagagtgacgtgtaggtggttaaatccttcacgtgagacacagaactac 320

                                                                       
Query: 121 aaagagtatgtgctacaattccatggtgtagctataccaaagaagttttttagattatat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtacgtgctacaattccatggtgtagctataccaaagaagttttttagattatat 380

                                                                       
Query: 181 tttagattttcctactctaaagtaggagaaatgaaagcaaaaaaaaaa---tagacaaat 237
           ||||||||||||||||| ||| ||||||||||||||||||||||||||   |||||||||
Sbjct: 381 tttagattttcctactccaaaataggagaaatgaaagcaaaaaaaaaaaaatagacaaat 440

                  
Query: 238 gggaata 244
           |||||||
Sbjct: 441 gggaata 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space:   149930
Effective search space used:   149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)