BAC Information

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BAC

Clone NameMSMg01-457K07
Chromosome6 (Build37)
Map Location 75,078,451 - 75,078,695
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145, EG546907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K07.T7 (MSMg01no457_k07.b1)MSMg01-457K07.TJ (MSMg01no457_k07.g1)
ACCAG543661AG543662
length1,628763
length of high quality
(start - end)
---246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no457_k07.b1 PHD_FILE: MSMg01no457_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005CHROMAT_FILE: MSMg01no457_k07.g1 PHD_FILE: MSMg01no457_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATGTTGCATAANAACAGTAGTCGNTNCGCGGGTNCGAGATGAGAGAAG
TCTGGAGTNTNCATAATACTACTACTCTAGAGNAATATATGAGCAGGAGN
AATATTTCCCCTGGCTCACTCAGCAGTCTTCTCCACTACACGNAGACGCA
GCGCCGCGTAGCTACGCGCGTCACTACACGACTCCGCACTGATGTTAGCG
CTATACAGTCTCTAGAGGCCGAATCCGTGCGCAACCATCTTATGACTCGC
CTCTGCCGCGTAGTATACTCANCTTCTCGTCTCGCTGATATTGATTATAT
TATTCAGCGGCATCGCGATGATGAGGACAGCAACATGTANTATCTACGAC
TCTTTGCAGCAGCTCTGATGACGCATATGAGAACTTGTTTATATATCTAT
GCCTTACCGACTTGCTTCGTGTAGCTCTTCATTATAACACTCTCATATAT
ACATCTACTATCTAGTGTACTCTTCTACTGCCATNCTGCTTCACATCGCG
CTCACTACTGTGTTACTGTCTCTATTATACGTCGAGGTGTGCACCGTGCG
ATATACGAGTGCGGTCGCGTGTGCGGCGTGNGGTACTGCATCGTAGTGTC
GTATGCGTTGNGTGCTGCGACCTCNTGCGCGCGTGCACTCGCTCTGTCGT
GCATGATTCGGCGCTCCTGCGTCCGCGCGCACTGGTCGGTATNACGATAG
CGCACTATTGACGCAGTCACCTGCGGCGCTGTAAGTATACTAGGCCCGAC
GATGCAACNCCAAGGACTATTATATGTGACAGCTGCTGTATAGAGACGAT
GCGAGTGNCTATCTACTGCNGTGTGCGATGGATGTGTTATATGTGAGGCT
CGCGGACACGATATGCGGCGTANTCGCGACGTGACGACGTGTCATCGCAT
ACGACTGCTCGTGTATCATGAGTCAGCGCGCGTCTAGATAATACGAGCTA
ATGATATATCACGATCGCGAGACTACGATATGATAGAGATATCTAGGTGC
GTCGAGAAGAGTGTGTAGCGTGTTCTCACCTATACCACGAACCTGCGCCG
ACGTGCTGTATCGTCTTATGTCACTATCAGTATCGCGCGGTCGGTGTAGT
GCTTTCTCTATTGTCATTTGACCGTGTATGGTCATCACGTAGGCTCCACT
CGCTCAGTACATGTATATGCGTGAGTTGATGCGGNGACTATGCTTCTACT
AAGTGCTAATACTCAATGTATATTAGTATCGTCCACAGACGCACACACCG
CTATGACGTCATGTGCCACACCACTAATGTCGCGCTATATCATCTCGCGA
TCGTGATCATCTCTCCGCTCTGTTCTTCGTTGGTCGTCGCTATAGAGTAT
ATGCTCTCTATCACTCTATGGTATACAAGAATCATACCTCCTACTCTATA
ATGCTTATATACTCTGTCTACTAANTACATCGCCTCTACTTATACGTACA
CAATGCGTTTTCGCCACGCAGAACTGCAATCACCTCTATTATGCATCTAG
CTCTCTCTCATATCTAGTTCTCCCACATCACTATGCCACTCGTCTCGTGA
TATCGAGATACCACTCTCGTGCCATCTCCTGTCGTCTCTTCCGACTTTGC
TCACGCTCTATCTTTCTCTACGCATGAG
NTTTTCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGGTTCACTTCTGTCTAT
TTGTTTTGTTCAACTTTGATGCAATGATTTTGTTTTTTTCTTATTATACC
TTATACTGATATATGTTTTTTTTAATGAATTAATAAATGAATGGATAGAT
GGATGAATACCTAGCCACTAGAGCTGAACTGTCTGTCTAACTCCTGGATG
ATGGAAATCAGTTTTCTGTAATACAATGACAGTGGGTAGATCAACCACTC
TAGGACAGGCCTCATGTTCAGGATTTTTTGACCAATGCTGCTTCAGTTTT
GTTATGTATTTCATGTTTTTTTTTTTTTTTTTTTTAGCGCTTGTTATATT
TTCCTTTTCTTTTCTTTTGTTATTGGTGTTAAGAAAATTGTTGGTTTGGT
TTTCTTCTGTGTAGTTGTTTAATCTTGTATTTTTTCCATCATCCTTTTTT
TTTTTTTTTTTTTTTTTTTCTTCTTATTTTTTTATTTTTTTATTTTCATT
TTCCTATTCTTTCCTTTTTTTTCTTTTTTTTTTTCTTTTTTTTCTCTTTT
CTCTTCTCAATTTTTTTTTCTTTTACTTTCCTCTTTACACCTCTTTATAC
TTTTTTTTTATTCTTTTTTTTTTTTTTTTTTTCCCTTTTTATTTTCTTTT
ATTTACGATTTTTTTCATACCTCATATTTCCTCTTTTTCCCACTTTTCCT
CATCCTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k07.g1 MSMg01no457_k07.g1 CHROMAT_FILE:
MSMg01no457_k07.g1 PHD_FILE: MSMg01no457_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:56 2005
         (246 letters)



>mm_chr6_75078251_75078896
          Length = 646

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttggttcacttctgtctatttgttttgttcaactttgatgcaatgattttgtttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttggttcacttctgtctatttgttttgttcaactttgatgcaatgattttgtttttt 260

                                                                       
Query: 61  tcttattataccttatactgatatatgttttttttaatgaattaataaatgaatggatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttattataccttatactgatatatgttttttttaatgaattaataaatgaatggatag 320

                                                                       
Query: 121 atggatgaatacctagccactagagctgaactgtctgtctaactcctggatgatggaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggatgaatacctagccactagagctgaactgtctgtctaactcctggatgatggaaat 380

                                                                       
Query: 181 cagttttctgtaatacaatgacagtgggtagatcaaccactctaggacaggcctcatgtt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cagttttctgtaatacaatgacagtgggtagatcaaccactccaggacaggcctcatgtt 440

                
Query: 241 cagga 245
           |||||
Sbjct: 441 cagga 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)