Query= MSMg01no458_d20.b1 MSMg01no458_d20.b1 CHROMAT_FILE:
MSMg01no458_d20.b1 PHD_FILE: MSMg01no458_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(657 letters)
>mm_chr6_96036286_96037342
Length = 1057
Score = 1164 bits (602), Expect = 0.0
Identities = 655/700 (93%), Gaps = 44/700 (6%)
Strand = Plus / Plus
Query: 1 gtaatggtctatagttgtaaggagaaatttccttgatgaggaggg--------------- 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtaatggtctatagttgtaaggagaaatttccttgatgaggagggctagggactctctct 218
Query: 46 ----------------------ctctctcatgtatttacggattatagtgaattaacaaa 83
||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctctctctctctctctctctctctctctcatgtatttacggattatagtgaattaacaaa 278
Query: 84 gtgacagaagtaggttcttctcttaaagaaagaagaaaggaaagaaaaaagaaaggagag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtgacagaagtaggttcttctcttaaagaaagaagaaaggaaagaaaaaagaaaggagag 338
Query: 144 agggaggaagaaagaagaaaggaaaaaaaggaaggaaggaagaaagaaggcaggcaggca 203
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 339 agggaggaagaaagaagaaagg-aaaaaaggaaggaaggaagaaagaaggcaggcaggca 397
Query: 204 gaagtagtatttgaatctgaacatgaatcatctatctacccaaagtactcatatcctcgt 263
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 398 gaagtagtatttgaatctgaacatgaatcatctatctacccaaagtactcagatcctcgt 457
Query: 264 gaaattgagttgttacttaaaaagtcttaattttctccttggaccctacatgttggctat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaaattgagttgttacttaaaaagtcttaattttctccttggaccctacatgttggctat 517
Query: 324 ttcaagttataagcagtctgtcagctttctaaagaacaaagaccctgtcctgcaactctc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttcaagttataagcagtctgtcagctttctaaagaacaaagaccctgtcctgcaactctc 577
Query: 384 catgcctattaagatctgcttctatgtctcaagattttagtagcctccattaatttttaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catgcctattaagatctgcttctatgtctcaagattttagtagcctccattaatttttaa 637
Query: 444 agattattttctataccaaaattacaaataaaccattgactttaaaaaagaaaaacaaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agattattttctataccaaaattacaaataaaccattgactttaaaaaagaaaaacaaaa 697
Query: 504 acaacaacaacaacaacaa------aaatcctggagcacacctcagctcctagctgcttc 557
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 698 acaacaacaacaacaacaacaacaaaaatcctggagcacacctcagctcctagctgcttc 757
Query: 558 tgcacagctgttccacactgtacactcttactttaattatctcatagctgggctcttctc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tgcacagctgttccacactgtacactcttactttaattatctcatagctgggctcttctc 817
Query: 618 cttccctcttcattcctcacagtctgttcccacccccaac 657
||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cttccctcttcattcctcacagtctgttcccacccccaac 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d20.g1 MSMg01no458_d20.g1 CHROMAT_FILE:
MSMg01no458_d20.g1 PHD_FILE: MSMg01no458_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(583 letters)
>mm_chr6_96191250_96192232
Length = 983
Score = 872 bits (451), Expect = 0.0
Identities = 451/451 (100%)
Strand = Plus / Minus
Query: 133 actgagtgctgctgactttctctaagcattatttatttatctatttctagtgtgtgaaga 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 actgagtgctgctgactttctctaagcattatttatttatctatttctagtgtgtgaaga 924
Query: 193 atatgtgtattatatatgaaagcaaggaaacaactttatgagattggtttccaccttcta 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 atatgtgtattatatatgaaagcaaggaaacaactttatgagattggtttccaccttcta 864
Query: 253 catttatgtgggttccagggatggaactcaggtctccagttatgggcagcaaatgccttc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 catttatgtgggttccagggatggaactcaggtctccagttatgggcagcaaatgccttc 804
Query: 313 accagctgagccatctcaccaatgcccaaattccataaagatcatctcaaatcattgaat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 accagctgagccatctcaccaatgcccaaattccataaagatcatctcaaatcattgaat 744
Query: 373 gcccttaaaatgagaaagaacatcacttggctagaaaaatgcagtaatataatctggaag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcccttaaaatgagaaagaacatcacttggctagaaaaatgcagtaatataatctggaag 684
Query: 433 ggctttctgaaaggggaagtgctgttcaggaccacctctgctaagacttgatctcttcct 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggctttctgaaaggggaagtgctgttcaggaccacctctgctaagacttgatctcttcct 624
Query: 493 tctgaaggtgaagcaggccacaactctgcacagggattaagaaaaggcactcatctacaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctgaaggtgaagcaggccacaactctgcacagggattaagaaaaggcactcatctacaa 564
Query: 553 gcaagcacagtggcaaatcaatgttagtact 583
|||||||||||||||||||||||||||||||
Sbjct: 563 gcaagcacagtggcaaatcaatgttagtact 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
