BAC Information

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BAC

Clone NameMSMg01-458I19
Chromosome6 (Build37)
Map Location 23,214,465 - 23,382,277
singlet/doubletdoublet
Overlap geneCadps2
Upstream geneWnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I19.T7 (MSMg01no458_i19.b1)MSMg01-458I19.TJ (MSMg01no458_i19.g1)
ACCAG544353AG544354
length750754
length of high quality
(start - end)
561 (78 - 638)521 (76 - 596)
definitionCHROMAT_FILE: MSMg01no458_i19.b1 PHD_FILE: MSMg01no458_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:11 2005CHROMAT_FILE: MSMg01no458_i19.g1 PHD_FILE: MSMg01no458_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,381,717 - 23,382,277)(23,214,465 - 23,214,985)
sequence
NNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCTTAGTTACCTTTAATGTCTCTCANATAAGAGATGGAG
AAGGGAGATGCATTAATTATATGTTCAAAGTATCTTTTGTTCTAATTTAA
TGTTAAAGCATTGCTTCACCAAATCCCTTAATATCTAATTACAGTTTAAT
ACCTAAGATACCGTTGATGTTATTTGATTTATTTTATATATTAAACCCAT
CATTGTTTGCTCTTTCTGAAATGTGATATTGGCATTAAATGTCCCTTAGG
TGTATGTCTTAAAGACAAGAGTAAGATCTCTTATTCACCAAGTCCATACA
GAGAAAAATGTAAAGACCTACCTAAGGTATTTAAATTGATAGTGTGGTCT
GGTTGTGAGGTAATATACTACCAGGTCTTTTATGAGATGACCATGGTGGC
AAGTTTCTTATAATTCAATCAATGAGGAATCAGAGACTTGGGGATTATTA
AGTTGACTACCAGGGTGTGCTACAAAGGTAGAACTTTTATCATAAAACAT
GGGTTTGGGGGTGGAGTGTGCCTAATGTATTGAAGATGTTGGGTTCAGTC
TCTAGTTCTACAAGGTAAATATTATCTTGTTCAACACCTGGAAATGCTGG
GTCATATATATTGTATATCTTATATGCTAAACTGAACTATATAAAAAATA
TTGGCCCAAGGACCTATAAAACCCAAACAAACAACCAAATGTTTGAACTT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGTATAGTATTTGAACATAAGTC
AATGTTTTTAAAAATTAAAATTACATTTATTTGTTTTGTGTGTGTGTGTG
TGTGTGTGTCTATCAGAGAACAACTAGTTTGAGTTGGTTCTTTCCCTTGA
CCATATGGATGGCGGGGATCAGTTCAAGGTTGTCCGGCTTGAAAGCAACT
GAGCCATCTCATTGGCCAATCTATAGCAATTCTTCAATTTCCCATCCCCT
GTGGGATTTAAAATGTGTAATCTATTTTGCTTCTCTTATGTTTAAAGTGT
GATTATTTTCACAACTCAATAAGACTGCTTAATAGTATTGATGTTGACCT
TGGGAGAACATCTACTTATTTATACGGAGAAACCAAGAACTCATGAAGAT
CTGTCATTCCATGGAAGAACTCTGAAAGGCATTTTAAAAAAGCATCTTTC
TGCTGTTTGCTAGATTTAGAGTCAGAGCAGACAGACTTCAGTGGACTTCC
CGAAGTGTCAGTTGATGCCAATATGCCATTTTGCTAAGTGATTGCTGGCA
GGTAGGTTTTGTTTGCTCTGGTTTTTACATAACCTACAGATGAAACCAAT
AACAGGAGTCATATTCTGACGGATATTGTATCACATTTGTGCACATCTTT
TCCCCCGTTTATGCGTACACAATGAAGAAAATTTCGTTTCTGTTCTTTGC
CTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i19.b1 MSMg01no458_i19.b1 CHROMAT_FILE:
MSMg01no458_i19.b1 PHD_FILE: MSMg01no458_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:11 2005
         (561 letters)



>mm_chr6_23381517_23382477
          Length = 961

 Score = 1064 bits (550), Expect = 0.0
 Identities = 558/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctctcanataagagatggagaagggagatgcattaattatatgttcaaagtatcttt 60
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgtctctcaaataaaagatggagaagggagatgcattaattatatgttcaaagtatcttt 702

                                                                       
Query: 61  tgttctaatttaatgttaaagcattgcttcaccaaatcccttaatatctaattacagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgttctaatttaatgttaaagcattgcttcaccaaatcccttaatatctaattacagttt 642

                                                                       
Query: 121 aatacctaagataccgttgatgttatttgatttattttatatattaaacccatcattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatacctaagataccgttgatgttatttgatttattttatatattaaacccatcattgtt 582

                                                                       
Query: 181 tgctctttctgaaatgtgatattggcattaaatgtcccttaggtgtatgtcttaaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgctctttctgaaatgtgatattggcattaaatgtcccttaggtgtatgtcttaaagaca 522

                                                                       
Query: 241 agagtaagatctcttattcaccaagtccatacagagaaaaatgtaaagacctacctaagg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 agagtaagatctcttattcaccaagtccatacagagaaaaatttaaagacctacctaagg 462

                                                                       
Query: 301 tatttaaattgatagtgtggtctggttgtgaggtaatatactaccaggtcttttatgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatttaaattgatagtgtggtctggttgtgaggtaatatactaccaggtcttttatgaga 402

                                                                       
Query: 361 tgaccatggtggcaagtttcttataattcaatcaatgaggaatcagagacttggggatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgaccatggtggcaagtttcttataattcaatcaatgaggaatcagagacttggggatta 342

                                                                       
Query: 421 ttaagttgactaccagggtgtgctacaaaggtagaacttttatcataaaacatgggtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaagttgactaccagggtgtgctacaaaggtagaacttttatcataaaacatgggtttg 282

                                                                       
Query: 481 ggggtggagtgtgcctaatgtattgaagatgttgggttcagtctctagttctacaaggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggggtggagtgtgcctaatgtattgaagatgttgggttcagtctctagttctacaaggta 222

                                
Query: 541 aatattatcttgttcaacacc 561
           |||||||||||||||||||||
Sbjct: 221 aatattatcttgttcaacacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no458_i19.g1 MSMg01no458_i19.g1 CHROMAT_FILE:
MSMg01no458_i19.g1 PHD_FILE: MSMg01no458_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:11 2005
         (521 letters)



>mm_chr6_23214265_23215185
          Length = 921

 Score =  953 bits (493), Expect = 0.0
 Identities = 514/521 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtatagtatttgaacataagtcaatgtttttaaaaattaaaattacatttatttgtt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtttagtatttgaacataagtcaatgtttttaaaaattaaaattacatttatttgtt 260

                                                                       
Query: 61  ttgtgtgtgtgtgtgtgtgtgtgtctatcagagaacaactagtttgagttggttctttcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ttgtgtgtgtgtgtgtgtgtgtgtctatcagagaacaactagtttgagctggttctttcc 320

                                                                       
Query: 121 cttgaccatatggatggcggggatcagttcaaggttgtccggcttgaaagcaactgagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaccatatggatggcggggatcagttcaaggttgtccggcttgaaagcaactgagcc 380

                                                                       
Query: 181 atctcattggccaatctatagcaattcttcaatttcccatcccctgtgggatttaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctcattggccaatctatagcaattcttcaatttcccatcccctgtgggatttaaaatg 440

                                                                       
Query: 241 tgtaatctattttgcttctcttatgtttaaagtgtgattattttcacaactcaataagac 300
           ||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaacctataaagcttctcttatgtttaaagtgtgattattttcacaactcaataagac 500

                                                                       
Query: 301 tgcttaatagtattgatgttgaccttgggagaacatctacttatttatacggagaaacca 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttaatagtattgatgttggccttgggagaacatctacttatttatacggagaaacca 560

                                                                       
Query: 361 agaactcatgaagatctgtcattccatggaagaactctgaaaggcattttaaaaaagcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaactcatgaagatctgtcattccatggaagaactctgaaaggcattttaaaaaagcat 620

                                                                       
Query: 421 ctttctgctgtttgctagatttagagtcagagcagacagacttcagtggacttcccgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttctgctgtttgctagatttagagtcagagcagacagacttcagtggacttcccgaag 680

                                                    
Query: 481 tgtcagttgatgccaatatgccattttgctaagtgattgct 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtcagttgatgccaatatgccattttgctaagtgattgct 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)