Query= MSMg01no458_k07.b1 MSMg01no458_k07.b1 CHROMAT_FILE:
MSMg01no458_k07.b1 PHD_FILE: MSMg01no458_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:18 2005
(537 letters)
>mm_chr6_77669364_77670300
Length = 937
Score = 969 bits (501), Expect = 0.0
Identities = 528/541 (97%), Gaps = 8/541 (1%)
Strand = Plus / Minus
Query: 1 caaagggggttggagaacattttctttcctatagtacaaattggttaattaatataatac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 caaaggggattggagaacattttctttcctatagtacaaattggttaattaatataatac 678
Query: 61 aatcatcattacacttatacctaatatccattatttattacagattggcactgttgtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatcatcattacacttatacctaatatccattatttattacagattggcactgttgtaaa 618
Query: 121 gtatgcatttctcctttcatttcactgtcatttgctttcatgtcactggtgccataaagt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 617 gtatgcatttctcctttcatttcactgtcatttgctttcaagtcactggtgccataaagt 558
Query: 181 cacatagaatatcttaggggtacagttcaacatcaggcctgattcaagggcatggtgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacatagaatatcttaggggtacagttcaacatcaggcctgattcaagggcatggtgcta 498
Query: 241 gccttgttttt----atggaatatttgatggaaacatttctcctagcattcagaattaca 296
|||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gccttg----tggacatggaatatttgatggaaacatttctcctagcattcagaattaca 442
Query: 297 gtactcatttcacaatgttgcctgaggctgtgcccagcagaataccatttccagtgaggc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gtactcatttcacaatgttgcctgaggctgtgcccagcagaataccatttccagtgagtc 382
Query: 357 catgtgtagtagagacctcagggaatgacattcaggtagaaatgcctgctgctaaggtgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtgtagtagagacctcagggaatgacattcaggtagaaatgcctgctgctaaggtgt 322
Query: 417 gctgtcactttcccttccataaggcactgtcctgatttccttacagtgagttatcatggc 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gctgtcactttcccttccataaggcactatcctgatttccttacagtgagttatcatggc 262
Query: 477 ctttattgctacttataagcttgcagagtttgaaaacatgtggcatgaggtcaagatcac 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ctttattgctacttataagcttgcagagtttgaaaacatgtggcatgaagtcaagatcac 202
Query: 537 a 537
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_k07.g1 MSMg01no458_k07.g1 CHROMAT_FILE:
MSMg01no458_k07.g1 PHD_FILE: MSMg01no458_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:18 2005
(235 letters)
>mm_chr6_77485151_77485785
Length = 635
Score = 337 bits (174), Expect = 5e-97
Identities = 216/242 (89%), Gaps = 22/242 (9%)
Strand = Plus / Plus
Query: 1 ttttttctctcctccagccaaatctaagttcaatgcaagttggcactttatcttctttat 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 201 ttttttctctcctccagccaaatctaagttcaatgcaagctgggactttatcttctttat 260
Query: 61 tctaggagttgtgtttgagtaaatttactaatagccattttttacacacttgcacacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggagttgtgtttgagtaaatttactaatagccattttttacacacttgcacacaca 320
Query: 121 cacacacacacatac--------tgagagagagagagggagagagagagagagagagaga 172
|||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct: 321 cacacacacacacacacacacactgagagagagagag--agggagagagagagagagaga 378
Query: 173 tttagagagagagagagagagagaggggctgagagagaggctgatatattcctcccatca 232
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 ----gagagagagagagagagagag--------agagaggctgatatattcctcccatca 426
Query: 233 tg 234
||
Sbjct: 427 tg 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
