Query= MSMg01no458_n17.b1 MSMg01no458_n17.b1 CHROMAT_FILE:
MSMg01no458_n17.b1 PHD_FILE: MSMg01no458_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:34 2005
(320 letters)
>mm_chr6_53573997_53574716
Length = 720
Score = 514 bits (266), Expect = e-150
Identities = 301/324 (92%), Gaps = 20/324 (6%)
Strand = Plus / Minus
Query: 1 atgaattgcttgctttagttggcttggccatgatgatttgggtcagtggtctttctcctc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgaattgcttgctttagttggtttggccatgatgatttgggtcagtggtctttctcctc 570
Query: 61 ccgtctttgggacgaagagctgtacattctccctggcaaatc----agcctttcccaccc 116
|||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 569 ccgtctttgggacgaagagctgtacattctccctggcaaatcagggag------------ 522
Query: 117 ttcatattcgcttctattagcaagtgctgatgcacagacgtttctatggtgttcctatct 176
| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 ---a-attcgcttccattagcaagcgctgatgcacagacgtttctatggtgttcctatct 466
Query: 177 gtggtgtattccatgggagccacgggccacaggtagtagttatctatactaaaatctagg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtggtgtattccatgggagccacgggccacaggtagtagttatctatactaaaatctagg 406
Query: 237 cactaagatttagcactgtattttagattataatctattttagtgaatttagaatttaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cactaagatttagcactgtattttagattataatctattttagtgaatttagaatttaaa 346
Query: 297 tatccatatgctgctggtagctac 320
||||||||||||||||||||||||
Sbjct: 345 tatccatatgctgctggtagctac 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_n17.g1 MSMg01no458_n17.g1 CHROMAT_FILE:
MSMg01no458_n17.g1 PHD_FILE: MSMg01no458_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:34 2005
(379 letters)
>mm_chr6_53381728_53382508
Length = 781
Score = 667 bits (345), Expect = 0.0
Identities = 370/379 (97%), Gaps = 2/379 (0%)
Strand = Plus / Plus
Query: 1 gcatgtaatgtttcattagctcacgtaaccttgtttatttgctttttacaattttatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgtaatgtttcattagctcacgtaaccttgtttatttgctttttacaattttatttg 260
Query: 61 ggaaaggaaatcaatttgcacccctgacacgctgccaggttcctgtttataagcacacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaggaaatcaatttgcacccctgacacgctgccaggttcctgtttataagcacacaa 320
Query: 121 taggcagcgtcgagggggtaaaaatacatagtttaggattccagccttgagtgtgacaca 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 taggcagcgtcgagggggtaaaaatacatagtttaggatttcagccttgagtgtgacaca 380
Query: 181 ctctgtatacgaaaccatagtggcaattgagttttcctgtccctgcagccactttttttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 ctctgtatacgaaaccatagtggcaattgagttttcctgtccctgcagccacactaggtt 440
Query: 241 atttaagcctttttttttttt--atcagaacattatccagtgtgaacccagtgaatagct 298
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaagcctttttttttttttaatcagaacattatccagtgtgaacccagtgaatagct 500
Query: 299 caaatggccatgggcattgaagtggaggagtatcaacagaaaagcagagaactcgttgct 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatggccatggtcattgaagtggaggagtatcaacagaaaagcagagaactcgttgct 560
Query: 359 ctttcttattgttgttttg 377
|||||||||||||||||||
Sbjct: 561 ctttcttattgttgttttg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 781
Length adjustment: 9
Effective length of query: 370
Effective length of database: 772
Effective search space: 285640
Effective search space used: 285640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
