BAC Information

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BAC

Clone NameMSMg01-459O02
Chromosome6 (Build37)
Map Location 49,011,130 - 49,011,368
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb
Downstream geneLOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459O02.T7 (MSMg01no459_o02.b1)MSMg01-459O02.TJ (MSMg01no459_o02.g1)
ACCAG545368AG545369
length768823
length of high quality
(start - end)
400 (44 - 443)259 (76 - 334)
definitionCHROMAT_FILE: MSMg01no459_o02.b1 PHD_FILE: MSMg01no459_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:58 2005CHROMAT_FILE: MSMg01no459_o02.g1 PHD_FILE: MSMg01no459_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATTTACTGAAATAAAATTTTTACTAGAATAGGATGGCCCATTAT
CTGTCTTAATAAGCTTAGGCAATCCCATGGCATTAAAGGCTTGTAGGCAA
TGATCAATTACGTTTTTAGAAGCCTCTCTTGTATGTAGAGAAGCAAAAAG
AAATCCTGAACAAGTATCGATACAAACATGTATATATTTTAATTTTTCAA
ATTTCGCATAATGGGTTCTATCCATTTTCCAAATATGATTAGGCATACGA
TCTCTAGGATTGACTCCTAAATGTGGCACTAGAGATAATGTAATACATTT
AGGACATTGTTTTACAATCATTCTCACTTGCTCCTTAGTGATCTTATGTC
GAAGCCTTAAGGTATGGCTAGAGAGATGAAACCTTTCATGATCACCTTTG
GCCTAAGCAACAGAATCCGAAATTAAGGCTTCTCCTATTATAGCTCTGCC
AATGCAATTATTGCCTTTATCTAAAGGTCTACGATGATCCCATTGAGATC
GCATGTGGCCAATATACATATAAATTTTTTCAGGCCAGAATGATGTTTTG
TCCTTTTTGAAAACACGTCCCTGATGGTGCACTATAAGTTTACCTTACCC
CCCCGTCTTCCATCAATTTATTTGCATTGCTCCATCATTTTAAACCGCCC
GCCAAACAATTTTCCCTTTCCCCCTGTCCCCGACCTATAAGACACCTCCT
CTATTCTCTTGCAAATCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGACCCTGTAGGCCCCAGCATATG
CCCTGCTTCCAAGTGGGTCTCTCTGCTGCCTGTGTGTGGGTTTTCTCTGT
TTCATTCCAGGTTATTAATAAGGATCCTGGCTTTATTCAGGAGAATCATT
TTGGCAGTGTTGTGCTCATGGGGCTTCTTGCATTCTGTCCAGGCTTCCTC
ATTTACTGATCTTCAACCCAAAGACTGACTGAGTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCATTTCTCTCC
CTCTCTGTGCGTGCGTTGTTTTTCTTCTTTCCTTCCTTCCTCAATCCCCC
TCCCTCTTCCTTTCTCCTCTCCCCCTCCTCTTCTTTTTTTTTCTTTTTCT
TTATCTTTTATTTTTTTATCTTTCCTTCATTGTTCTCTTTTTTACTTTAT
TCCCTCCCTTTTTTTCTTTTTTTATCCTACTTATCCTCTACCGCCTCTTC
TCTCTTACATCTAGTTATCACACTCGTACTATCTCGTTCTCCTTTCCCCC
CCTTTTTTATCTCCATATATTCTTCCCTACTACACGCTCAGCTCACTATC
TCTCCATCCCCTTCTGTTTTTCTCTTTTTCCCCCCTTCCCTATCTCCCCC
CTCTTTTTTTCTTCTTCCTTTCTCCTCACTCACAAGAGCTCTTGTCTTTA
TTCTTCTAACATTTATCTCCCTTCCCCCTCCTTTACATCTTTATTCTTCC
GCCCCCTTCTTTATTCTATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_o02.g1 MSMg01no459_o02.g1 CHROMAT_FILE:
MSMg01no459_o02.g1 PHD_FILE: MSMg01no459_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:58 2005
         (259 letters)



>mm_chr6_49010961_49011619
          Length = 659

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaccctgtaggccccagcatatgccctgcttccaagtgggtctctctgctgcctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tagaccctgtaggccccagcatatgccctgcttccaagtgggtctctctgctgcctgtgt 349

                                                                       
Query: 61  gtgggttttctctgtttcattccaggttattaataaggatcctggctttattcaggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgggttttctctgtttcattccaggttattaataaggatcctggctttattcaggagaa 289

                                                                       
Query: 121 tcattttggcagtgttgtgctcatggggcttcttgcattctgtccaggcttcctcattta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcattttggcagtgttgggctcatggggcttcttgcattctgtccaggcttcctcattta 229

                                                                      
Query: 181 ctgatcttcaacccaaagactgactgagtctctctctctctctctctctctctctctct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ctgatcttcaacccaaagactgactgagtctctctctctctctctctctctctctctct 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)