BAC Information

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BAC

Clone NameMSMg01-460E10
Chromosome6 (Build37)
Map Location 74,586,567 - 74,587,037
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460E10.T7 (MSMg01no460_e10.b1)MSMg01-460E10.TJ (MSMg01no460_e10.g1)
ACCAG545672AG545673
length708709
length of high quality
(start - end)
432 (66 - 497)467 (73 - 539)
definitionCHROMAT_FILE: MSMg01no460_e10.b1 PHD_FILE: MSMg01no460_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:28 2005CHROMAT_FILE: MSMg01no460_e10.g1 PHD_FILE: MSMg01no460_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTTTACCGGTTGTTTACCTCTTTCATCGATTAGTTCTAGGGACATT
CTAGAACCATTGCTGGGGAAGTTTGAAAGACTGGCCCTTGCCAGGCAGTG
GTGGTACATGTCTTTAATCCTAGCACTTGGGAGACAGATAGATGCAGGCA
GATTTCTGAGTTCAGGGCTAGCTTGGTCTACAGAGTGAGTTCCAGGATAG
CCAAGGCTTTACAGAGAAGCCCTGTCTCAAAACAAACAAATAAACAAACA
GACAGACAGACTGACGGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAAAAGTAAATAAATAAATAAACAAACAAA
CAATTAAAAAACGGGCCCCACCTGTGGATCCATCTCATATACAGTCACAA
ACCCCAGGCACTATTGTGGATGCCAATAAATGCTTGCTTGACAGGAGCCT
GACATAGCTGTCTCCTGAGAGGGTCTGCCAGAGCCTGACAAATACAGACG
TGGATGCTCACAGCTAACCATTGGACTGAGTGTGGCGCCCTCAATGGAGG
AGTTACAGAAAGAACTGAACGAGCTGAAGGGTGTTTGCTACCTCCCTAGA
AAAACACAATATCCACCCACCCCCCGAAGCTCCCAGGGAATAACCCCCAA
CTTGAGAG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTTCATTTTTGGAGAGGACCCCCGAG
TTGAAAACTTTTTTGCAGTGTGTTGATTGGGACATTTGCAGGCAATATAC
TGAGTGAAGGCAGATCAAGACAGGAATTGAACTTAGAGGAAATATGCAAT
ACATCTGCAAATGATTTCTTAGCAACTGAGGAAGAGAATTGTGGAGTAGA
AGATTGGACTCTCCAGAGGTGTCCTGAGTTTCAACATGAAGTCCTTGACT
TATGTTCCTGCATCTGCCTCTGAGTACGGTTGATAATGCAGCTAAAATAA
GTTCTCAAGGAAAGGTGTCCAGTCTTAGTTCCCACCACCAATATTTCAGA
AAGGAGAAATTGTGTGAAGGATGGGTTAATCTTGAAGGTGTTTTCTTGGA
AAGTTAGGGAATTTACCACACTGTTAAAGAGAAACATCTAAATAAATAAA
CCCACAATTGGGTATTTTCTATGAAATAAAGATAGGACTTTGGAAGAGTT
GATTTAACAATTTAGCCCCCTAGTTTATTCCGTCAATTTTCTTCCATAGG
AACTAAAGATTTTATTGCTGAAAGCAATGTGGGCAAACTCCTCAAGTTGG
AAAAATAAGAACACGTTAATTTTTCCAAATGGGCCTTCCTAAGGTTGGAT
GGTTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_e10.g1 MSMg01no460_e10.g1 CHROMAT_FILE:
MSMg01no460_e10.g1 PHD_FILE: MSMg01no460_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:28 2005
         (467 letters)



>mm_chr6_74586367_74587237
          Length = 871

 Score =  818 bits (423), Expect = 0.0
 Identities = 458/471 (97%), Gaps = 4/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttcatttttggagaggacccccgagttgaaaacttttttgcagtgtgttgatt-ggg 59
           ||||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||
Sbjct: 201 agtttcaattttggagaggacccctgatttgtaaacttttttgcagtgtgttgatttggg 260

                                                                       
Query: 60  acatttgcaggcaatatactgagtgaaggcagatcaagacaggaattgaacttagaggaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatttgcaggcaatatactgagtgaaggcagatcaagacaggaattgaacttagaggaa 320

                                                                       
Query: 120 atatgcaatacatctgcaaatgatttcttagcaactgaggaagagaa---ttgtggagta 176
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 321 atatgcaatacatctgcaaatgatttcttagcaactgaggaagagaagaattgtggagta 380

                                                                       
Query: 177 gaagattggactctccagaggtgtcctgagtttcaacatgaagtccttgacttatgttcc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagattggactctccagaggtgtcctgagtttcaacatgaagtccttgacttatgttcc 440

                                                                       
Query: 237 tgcatctgcctctgagtacggttgataatgcagctaaaataagttctcaaggaaaggtgt 296
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgcatctgcctctgagtacggttgataatgcagctaaaataaattctcaaggaaaggtgt 500

                                                                       
Query: 297 ccagtcttagttcccaccaccaatatttcagaaaggagaaattgtgtgaaggatgggtta 356
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtcttagttcccaccaccaatatttcagaaaggagaaattgtgtgaaggatgggtta 560

                                                                       
Query: 357 atcttgaaggtgttttcttggaaagttagggaatttaccacactgttaaagagaaacatc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttgaaggtgttttcttggaaagttagggaatttaccacactgttaaagagaaacatc 620

                                                              
Query: 417 taaataaataaacccacaattgggtattttctatgaaataaagataggact 467
           |||||||||||||||||| |||| ||||||||||||||| |||||||||||
Sbjct: 621 taaataaataaacccacagttggttattttctatgaaatgaagataggact 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 871
Length adjustment: 10
Effective length of query: 457
Effective length of database: 861
Effective search space:   393477
Effective search space used:   393477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)