Query= MSMg01no460_i23.b1 MSMg01no460_i23.b1 CHROMAT_FILE:
MSMg01no460_i23.b1 PHD_FILE: MSMg01no460_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:50 2005
(379 letters)
>mm_chr6_80009437_80010215
Length = 779
Score = 621 bits (321), Expect = 0.0
Identities = 341/349 (97%), Gaps = 4/349 (1%)
Strand = Plus / Minus
Query: 5 gaattctcatgcttg--tccggcaagcattttactgactttgatttgttcttaaagaagt 62
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 401 gaattctcatgcttgcat--ggcaagtattttactgactttgatttgttcttaaagaagt 344
Query: 63 caacctgaatgtactaaacaatactaaaaatttcaactcttacactcctttaaaacaggg 122
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 343 caacctgaatgtactaaacaatgctaaaaatttcaactcttatactcctttaaaacaggg 284
Query: 123 ccgaaataaattcattatatgttacttattcatttatttgtatcttgttttcttcaaaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccgaaataaattcattatatgttacttattcatttatttgtatcttgttttcttcaaaca 224
Query: 183 ttaccttatgtagccctggttggtcttgaacttttctatgactgaggattatcttgaatt 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttaccttacgtagccctggttggtcttgaacttttctatgactgaggattatcttgaatt 164
Query: 243 cctggtcccccccatcattccctctgcaattctaaggttacaattctgcatcgccctcta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 cctggtcccccccatcattccctctgcaattctaaggttacaattctgcatcgccctcta 104
Query: 303 cacagctgagattgtgtgtgtgtgtgtgtgtgtgtattatatatatata 351
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cacagctgagattgtgtgtgtgtgtgtgtgtgtgtattatatatatata 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_i23.g1 MSMg01no460_i23.g1 CHROMAT_FILE:
MSMg01no460_i23.g1 PHD_FILE: MSMg01no460_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:50 2005
(507 letters)
>mm_chr6_79813652_79814558
Length = 907
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%), Gaps = 1/508 (0%)
Strand = Plus / Plus
Query: 1 ttagaaagtattttaaaaaaatagaactttcacattttttacaaaaatacaaagaagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttagaaagtattttaaaaaaatagaactttcacattttttacaaaaatacaaagaagtat 259
Query: 61 atggaactcgaggacaaaaagagagggcctgcctacatcatgcacattagcaatattaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggaactcgaggacaaaaagagagggcctgcctacatcatgcacattagcaatattaca 319
Query: 121 aaagtcttaagaatgggagagagaaagagtgctctggctgcctaaggaagtgatgaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagtcttaagaatgggagagagaaagagtgctctggctgcctaaggaagtgatgaaagc 379
Query: 181 tgttaatatcttccagaacaaggcatgaggttaaaacataggtcagatgagggctggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttaatatcttccagaacaaggcatgaggttaaaacataggtcagatgagggctggtgc 439
Query: 241 ttgagtaggaaggtggatgacaaaccaagtaaggcagtaaagagaagagagaagcggttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgagtaggaaggtggatgacaaaccaagtaaggcagtaaagagaagagagaagcggttg 499
Query: 301 ccccccccc-aaccccctctgagaatttctgactcaactgggattacaggaaggacaggc 359
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 ccccccccccaaccccctctgagaatttctgactcaactggaattacaggaaggacaggc 559
Query: 360 tccaatcagatatattgagggcagggagcacttgagataagcagatgttgttttgttttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaatcagatatattgagggcagggagcacttgagataagcagatgttgttttgttttg 619
Query: 420 tttgttattaataagccctcattcaaactaacccagtctatttggcatcagtggagagtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgttattaataagccctcattcaaactaacccagtctatttggcatcagtggagagtt 679
Query: 480 acccaatggagggtagacaatggaccag 507
||||||||||||||||||||||||||||
Sbjct: 680 acccaatggagggtagacaatggaccag 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
