BAC Information

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BAC

Clone NameMSMg01-460L23
Chromosome6 (Build37)
Map Location 48,889,750 - 49,035,685
singlet/doubletdoublet
Overlap geneLOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
Upstream geneA230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460L23.T7 (MSMg01no460_l23.b1)MSMg01-460L23.TJ (MSMg01no460_l23.g1)
ACCAG546031AG546032
length736740
length of high quality
(start - end)		500 (38 - 537)474 (69 - 542)
definitionCHROMAT_FILE: MSMg01no460_l23.b1 PHD_FILE: MSMg01no460_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:06 2005CHROMAT_FILE: MSMg01no460_l23.g1 PHD_FILE: MSMg01no460_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(49,035,190 - 49,035,685)(48,889,750 - 48,890,223)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
AACATTTTCATAAAACCGGTTAATTTTGTAGTTTTAGCCAAAAAGTGCCC
CCTTTTTACAACTGAATTCATCTAGCATTTTCATATGGTGGATTTAAACT
GCTTAAAAAAGAAAATGTGACCGGCTCTCCTGCTTGGGTCTCAGGGGAGA
TATGCTTAAGGCCAGAGCTCTTCCTCAGTATTTGATTTTTCCAGTGTTTG
TTTTTTAAAAAACTGACAGGTGCTACATTTCTATCTGTTGGTTTCAATTC
TGCCATATTTCATGTCTAGCCTTTAGAGTGGCCAATCATGTTTTACTTTC
ATTTAAGCACTGGTAGTCTGGAGTACCTGGTACTGAGTAACTCTATAATT
GTGTTTTGTGTTCACCATATACAGATCATTTCTCATCTGTAGTGTGCCCC
AAATGCAGCTTCACTTTCCAGGTACCCTGATGCAGAATAAAGTTTTCATC
ATAAACCACAGCTTCTGTAGTATGTTTTCAGATGAGTGAGTGTTCTTGAG
TTATTTTCTATGATAATCCTACAGTAAACAGTAACCTACCAGCACGTTAT
TTTTTCAGGGCCTGATTCAAGAATGTGAACCTTGGGTGTCCTATTTTACA
TCAACTAAGATCTACCGATTTACTTGACTTTCCCTTAAAGGTCTACAAAA
TACATAATGGGACTTGGGGCCCCCGATTTTTAAAAN

AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGGGTTTGTGACACAAAGTGAACCAGTCCT
CCACAGGCAAGCAAGTTTCTGGGCTGCAAGGCCATGTAGAGTCAGGCAGT
AGATGGTCCCTCCCATTGTCAGAGCCATGGTGGTCTGGTAAAGCATTTGG
TCCGGAAGGCCTCCTTTCAGGTGAATGGGCATGCCATCAGCCTTCTGGAA
GAACTTCTGCAGCTCTGGAACTTTGTTCTTCCCAGCATAATCATATGCTG
TTGCACTGGAGGTCGGTTTGGTTGGTGTAGCAAATGTGGTAGGTGGTGTT
TCCATGGAAACCAGCTGTAACCCCTGCGGAGTATAGGCTTTCGAAGCCCA
AGCTCTAGCCAACTTCTGCGTGGACCTGCTAAACTTATAGTACATGTTGG
CTGAGGCCGTCTTTGCACTGCCGCTGCCTGTGCAACCGCCCTAGAAAAGG
CGAGAGTGAAATCTTTATGTATGTGAGTACATTGTTGCTGTCTTCAGACA
CCCCAAAAGAGGGCATCAGGTCCCGTTAAATATGGGTGTGAGACCCCACG
TGTTAGGCGGGAAATTCACTTCAGAACCTTTGAATAGTATTTTTCGCCTC
TTATATTCTTGAACCTATTTCTTCTCTCTGATATGGATTTTATGTATTTT
TACATAGTTATATTTCATTGTATTCCGGTCCTCTCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_l23.b1 MSMg01no460_l23.b1 CHROMAT_FILE:
MSMg01no460_l23.b1 PHD_FILE: MSMg01no460_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:06 2005
         (500 letters)



>mm_chr6_49034986_49035885
          Length = 900

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaacattttcataaaaccggttaattttgtagttttagccaaaaagtgcccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattcctaaacattttcataaaaccggttaattttgtagttttagccaaaaagtgcccc 641

                                                                       
Query: 65  ctttttacaactgaattcatctagcattttcatatggtggatttaaactgcttaaaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctttttacaactgaattcatctagcattttcatatggtggatttaaactgcttaaaaaag 581

                                                                       
Query: 125 aaaatgtgaccggctctcctgcttgggtctcaggggagatatgcttaaggccagagctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aaaatgtgaccggctctcctgcttgggtctcaggggagatatgcttaaggccagagctct 521

                                                                       
Query: 185 tcctcagtatttgatttttccagtgtttgttttttaaaaaactgacaggtgctacatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcctcagtatttgatttttccagtgtttgttttttaaaaaactgacaggtgctacatttc 461

                                                                       
Query: 245 tatctgttggtttcaattctgccatatttcatgtctagcctttagagtggccaatcatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatctgttggtttcaattctgccatatttcatgtctagcctttagagtggccaatcatgt 401

                                                                       
Query: 305 tttactttcatttaagcactggtagtctggagtacctggtactgagtaactctataattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttactttcatttaagcactggtagtctggagtacctggtactgagtaactctataattg 341

                                                                       
Query: 365 tgttttgtgttcaccatatacagatcatttctcatctgtagtgtgccccaaatgcagctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgttttgtgttcaccatatacagatcatttctcatctgtagtgtgccccaaatgcagctt 281

                                                                       
Query: 425 cactttccaggtaccctgatgcagaataaagttttcatcataaaccacagcttctgtagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cactttccaggtaccctgatgcagaataaagttttcatcataaaccacagcttctgtagt 221

                           
Query: 485 atgttttcagatgagt 500
           ||||||||||||||||
Sbjct: 220 atgttttcagatgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_l23.g1 MSMg01no460_l23.g1 CHROMAT_FILE:
MSMg01no460_l23.g1 PHD_FILE: MSMg01no460_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:06 2005
         (474 letters)



>mm_chr6_48889550_48890423
          Length = 874

 Score =  893 bits (462), Expect = 0.0
 Identities = 471/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagggtttgtgacacaaagtgaaccagtcctccacaggcaagcaagtttctgggctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagggtttgtgacacaaagtgaaccagtcctccacaggcaagcaagtttctgggctgca 260

                                                                       
Query: 61  aggccatgtagagtcaggcagtagatggtccctcccattgtcagagccatggtggtctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggccatgtagagtcaggcagtagatggtccctcccattgtcagagccatggtggtctgg 320

                                                                       
Query: 121 taaagcatttggtccggaaggcctcctttcaggtgaatgggcatgccatcagccttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagcatttggtccggaaggcctcctttcaggtgaatgggcatgccatcagccttctgg 380

                                                                       
Query: 181 aagaacttctgcagctctggaactttgttcttcccagcataatcatatgctgttgcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaacttctgcagctctggaactttgttcttcccagcataatcatatgctgttgcactg 440

                                                                       
Query: 241 gaggtcggtttggttggtgtagcaaatgtggtaggtggtgtttccatggaaaccagctgt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtcagtttggttggtgtagcaaatgtggtaggtggtgtttccatggaaaccagctgt 500

                                                                       
Query: 301 aacccctgcggagtataggctttcgaagcccaagctctagccaacttctgcgtggacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacccctgcggagtataggctttcgaagcccaagctctagccaacttctgcgtggacctg 560

                                                                       
Query: 361 ctaaacttatagtacatgttggctgaggccgtctttgcactgccgctgcctgtgcaaccg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaacttatagtacacgttggctgaggccgtctttgcactgccgctgcctgtgcaaccg 620

                                                                 
Query: 421 ccctagaaaaggcgagagtgaaatctttatgtatgtgagtacattgttgctgtc 474
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ccctagaaaaggcgagagtgaaatctttatgtatgtaagtacattgttgctgtc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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