BAC Information

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BAC

Clone NameMSMg01-460M01
Chromosome6 (Build37)
Map Location 28,044,007 - 28,044,363
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460M01.T7 (MSMg01no460_m01.b1)MSMg01-460M01.TJ (MSMg01no460_m01.g1)
ACCAG546035AG546036
length721721
length of high quality
(start - end)
525 (66 - 590)363 (67 - 429)
definitionCHROMAT_FILE: MSMg01no460_m01.b1 PHD_FILE: MSMg01no460_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:06 2005CHROMAT_FILE: MSMg01no460_m01.g1 PHD_FILE: MSMg01no460_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCAGTA
ATAACGTTGCCTATTCAGTAACATTCAGAATTGCCTCTGGTATTACACTA
TCACTTTGAATAAAAGCTAAGTCACTGCCCTACACAGGAATTTACCATCT
TCTAGGAAGAAGGAAGTTTGAGACCTAAAGAGGAACCAGAATAGATACTT
AGAACTATAGATAGCTGAGCTACACCCATACACACGTATTTACAATGGCC
TAGGGGGAAGGTGGACTATACAATAGACTAAAATAGGAACTTTGGCGAGG
GTATGATGCCTTTGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGAA
GCTCTTGTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCC
TGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTTATGTAAGAATCCAGCA
ACCTCTTTGTACCTTGCTGGTGTGTCACCCAACTTTGCTATTTTCTTCTG
TATAAAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATTCTACACA
ACCTCTCCTGTGTGCATCTGTCTGTCATCTCATCCAACGTTTTGCCCACC
TGCGACTAGAGACCCATTCCACGCAGACTAAGGTGCCCCGAAGGTCTGCG
GCACAGGCTGACCTTGAACTCAGAAATCCACCTGCCTCTGCCCTCCAAGT
GCTGGGATTAAAGGTGTGTGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGTTGTATTAGATCTCCCTGCTCACCGCACTG
TTCTTCTCCCACTGACCAGCAAACAGCTGAAGTCTTGGCTGAGCTTCAAC
TTGGACAGTGGCTTCTTGGCTTTGTAAAAGATGGTAGGGACTTAATGAGC
TTCCCTTCTGATTTAGCACTTGGGTGATTTCTTTCCAACAGCTGCTGTGT
CTTCTTGCTCTTTATCAAATGAGGTTTCCAGGTGAATTTACTTCCTCAAC
AATTTCAGGATGAAAACTGAAGGCACAGAGTCCTGGTCTAGGTGTTAAAT
CTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGCGCCTTTCTCTAGGGTATATTTA
ACAAACGTGGCAAGTCCCTCGGCTTACAATTGGCTTGCCCGTGGTTTCTC
ACAGCAGTGGGGCATCGGCTCATGTAACCTCTACTTTACGGATTTATCTC
TCCCAGAGATTGAAACGTACACACCCGGCGCAGCATTCCTAAGTAAAACT
TTTGTGAGGAATGAAACTGTGCACCACATGATGCCCAAAAACACGTATTA
ATTCGTGTGACGGCACCATTCGGTTTATTTCCTTTTTTTTTTTGTTCTTT
GAGCCATTGCATTCTCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_m01.g1 MSMg01no460_m01.g1 CHROMAT_FILE:
MSMg01no460_m01.g1 PHD_FILE: MSMg01no460_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:06 2005
         (363 letters)



>mm_chr6_28043878_28044640
          Length = 763

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagttgtattagatctccctgctcaccgcactgttcttctcccactgaccagcaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acagttgtattagatctccctgctcaccgcactgttcttctcccactgaccagcaaacag 427

                                                                       
Query: 61  ctgaagtcttggctgagcttcaacttggacagtggcttcttggctttgtaaaagatggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctgaagtcttggctgagcttcaacttggacagtggcttcttggctttgtaaaagatggta 367

                                                                       
Query: 121 gggacttaatgagcttcccttctgatttagcacttgggtgatttctttccaacagctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gggacttaatgagcttcccttctgatttagcacttgggtgatttctttccaacagctgct 307

                                                                       
Query: 181 gtgtcttcttgctctttatcaaatgaggtttccaggtgaatttacttcctcaacaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtgtcttcttgctctttatcaaatgaggtttccaggtgaatttacttcctcaacaatttc 247

                                                                       
Query: 241 aggatgaaaactgaaggcacagagtcctggtctaggtgttaaatctgagagagagagaga 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 aggatgaaaactgaaggcacagagtcctggtctaggtgttaaatcttagagagagagaga 187

                                                                    
Query: 301 gagagagagagagagagagagagagagagagagagagagagagagagagagagagag 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gagagagagagagagagagagagagagagagagagagagagagagagagagagagag 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)