BAC Information

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BAC

Clone NameMSMg01-460M18
Chromosome6 (Build37)
Map Location 108,461,887 - 108,462,294
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460M18.T7 (MSMg01no460_m18.b1)MSMg01-460M18.TJ (MSMg01no460_m18.g1)
ACCAG546069AG546070
length1,059751
length of high quality
(start - end)
---408 (68 - 475)
definitionCHROMAT_FILE: MSMg01no460_m18.b1 PHD_FILE: MSMg01no460_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:09 2005CHROMAT_FILE: MSMg01no460_m18.g1 PHD_FILE: MSMg01no460_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCCCCTCATTCGCGCATAAACCTCCCCTCTAGGGCGCGGGGATT
ATTACTCAATATTCTTCTATATTTCATATACCCACGACCCTTATCCAGCG
TCGCCCGACGTCGTCCCGGGCGTCGGCGCGGCCTAACCTAGCACTCACCG
TCGCCATGCACTATCCATGGATAATTTCTCATTAAATTCATACTTACTTC
CGCCCACGACCACCAACCCATTTATGTAAGCAATCCTACACGAGCGTAGG
CGACGCGTGGCGGTGTCGGTGTTTAACGCGCCCTCACCCCGCACCTTTCC
CTCCAACTTCAAAATTATACACATGACCACAGATGCGTGTGCGGGTGAGA
TTGAGGCGCCTATGACTCCTCATTACTAACCATTCTCCTACCTGCAGATG
ACTGTTCATCTGTATCTGCACGTGAACTAGTCCTCGCACGGTGTGGCGGA
GTCGGGTGGGTTAGAGGGCCGCTTTGCCCCTTATAGCCCATCGTCGACCT
GTTGGCGCTGCGTGTGTTGTATCTCCCATCCCTCTCGAGCCGTAACTAGT
AGGATATATACGGTTTAAACCCCACCGCACGCTCCGCCCCCATATTTCAT
ATTAGTGGCCTTAGTTATCTCGGCCTTCGAGTGGTCATCGCCCGCTAAGA
TTTAACCGCTACACGCCATCACGCCGAAACTAAGTGATGCGAGCACGCCA
TGTGATAATTATCACTCAGCCATGTCATACGAGTCGACAGCCGTACCGAA
GACGTCCGATATTTGCTCTCGTTTGTCCCACCTCCTATCTGCTGAGCACC
TTTGAAGTCGAAGAGTGTAGGCCAGAATGAATGACTCGCCGTACTGTCAT
CTCTATATTATATGGCTACTATGACCGCGCCACTTACATCTTCGCCGATC
CATCCTCGCCTGCGCGTCTCCCGTGTGATGGTTGTGTCGAGTACAACGGC
AGTATCTACCGGACGAGTGCTATACGTACGTTATTCGCTAATGTACATCT
CCGTTATCCACGACCTCTCTCTATTTAGTGTGCGCGCGCAGAGAACAGAG
CCGCAAGAG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCAGGATTAGCTCATTCCATTAGTGAGAGATG
TTGGCGGGCTAAGCGGAATGGATTATTTTCTCTAGTTTCAGAATCTGGCT
GGCTGTACTTTGAGCTTTTAAGCAAAGGGGTGGCAGGATGTACTTGTGAG
CGCTATTATGTGGCCTATTTTGGTCATTCTGCATCAGAAATCTTTAGAGC
CATCCTGGAGTCTGTTCTGGAACTGTTCTGTGTCGTGCATGAGCATCCCT
GGACAGAGTTTAGCCCGTGAGTCAAGGAGACCCACATCCACCAGTGCAGC
ACACTCCAGTCCTCCCTGGGGAAAGTGGCAGAGGGCAGGGATTGTCTCTT
GGGTCCCTGGTTGTTGTTTGTTCGTTTGTTTTGTTTTGTTTTGAGGTAGG
ATCTCTCCCTTTGTGCCCTTTGATCTGTGCCCTCTCCCCCTGCTGGGTGT
GGCTTTCCTTACTACTCTCCTTCCTTGTGACCCTGCTTCCTTTCTTCTTT
ATTTCCGGCCTGCTGGATATGGTGTTTTTTCTTTCTCTTTTGTTTTGTGC
CTCCATCTTCATTTCTTTTTTTCTTCCTTTCCTCCTCTTTTTAGCCCCCC
TTCGATCTCGCCCCCCATTTTCCCTTATTTATTTACACTTCATTTCATCT
TTTACCCGCCTCTCCCTCCCTCTCTCTTTCCTCTTTTTCCCTCCCTATTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_m18.g1 MSMg01no460_m18.g1 CHROMAT_FILE:
MSMg01no460_m18.g1 PHD_FILE: MSMg01no460_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:09 2005
         (408 letters)



>mm_chr6_108461687_108462494
          Length = 808

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaggattagctcattccattagtgagagatgttggcgggctaagcggaatggattatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 accaggattagctcattccattagtgagagatgttggcgggctaagcggaatggtttatt 260

                                                                       
Query: 61  ttctctagtttcagaatctggctggctgtactttgagcttttaagcaaaggggtggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctctagtttcagaatctggctggctgtactttgagcttttaagcaaaggggtggcagg 320

                                                                       
Query: 121 atgtacttgtgagcgctattatgtggcctattttggtcattctgcatcagaaatctttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtacttgtgagcgctattatgtggcctattttggtcattctgcatcagaaatctttag 380

                                                                       
Query: 181 agccatcctggagtctgttctggaactgttctgtgtcgtgcatgagcatccctggacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccatcctggagtctgttctggaactgttctgtgtcgtgcatgagcatccctggacaga 440

                                                                       
Query: 241 gtttagcccgtgagtcaaggagacccacatccaccagtgcagcacactccagtcctccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttagcccgtgagtcaaggagacccacatccaccagtgcagcacactccagtcctccct 500

                                                                       
Query: 301 ggggaaagtggcagagggcagggattgtctcttgggtccctggttgttgtttgttcgttt 360
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ggggagagtggcagagggcagggattgtctcttgggtccctggttgttgtttattcgttt 560

                                                           
Query: 361 gttttgttttgttttgaggtaggatctctccctttgtgccctttgatc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttgttttgttttgaggtaggatctctccctttgtgccctttgatc 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)