BAC Information

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BAC

Clone NameMSMg01-461E07
Chromosome6 (Build37)
Map Location 47,325,617 - 47,543,417
singlet/doubletdoublet
Overlap geneA930035D04Rik, Cul1, Ezh2
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461E07.T7 (MSMg01no461_e07.b1)MSMg01-461E07.TJ (MSMg01no461_e07.g1)
ACCAG546431AG546432
length764745
length of high quality
(start - end)
239 (81 - 319)239 (81 - 319)
definitionCHROMAT_FILE: MSMg01no461_e07.b1 PHD_FILE: MSMg01no461_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:48 2005CHROMAT_FILE: MSMg01no461_e07.g1 PHD_FILE: MSMg01no461_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,325,617 - 47,325,852)(47,543,179 - 47,543,417)
sequence
CAAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGGATC
CAGGGAATTCTCCATCTTCCCCTAGATCTCATAGGCACTCCACACGCAGT
GCACAGGCACAAACACAGACTAAACACCACACATGTAAAGCAAATATTTC
TTTTTAAGCTGGATATTGTCAGATTTAAAGGAAACTCCAATTCCCCAAAT
TCCAAAAGGCAGCCCAAATATCTAGAAATAAGTTCAACCTGGACTACAGG
ATTATTTCTGGCAGTAAGGTAAAAGCCAGCATTCCTCAGGAACTTGTAAA
ACCAGCTCCCATCTGCTTTTTTATTTATTTCCCTTACCTCTATCATCAAA
GTGAATGCCGTTTTTGCACGCTCCTCTCTGTATCACATACTACACGTTTT
CAAAGTCCACGCTGGCCTTCCCAAGTCCTTCTTCACTTTCTCTTCTAACC
TAAACCCCCTTTCTTCTCCACATCCCTCCTAACTGTCCTGTCTTTCTTCT
CACTTTTCTGTTACAGTTCTTCTCCCTTTTACTGTTTTTTTCCTTCACCT
TCGCACTTTGTTCCCACTTTTTCCTCTTAAATTTCCCCTTCCTCCGTATT
TCATTCTGAACCTTTTGTAATTCCACTCCTTATGCCTTATTTTATTACCT
CCCTTTTTTTTTTTTCCTCTTATAAACACTTTTTATTTTTTCCACAATCC
CTTTATATTACTTCTTAACTTTCTTACCTCCTTCCTTTTATCTATTTTTT
TTCCCCTTTTCCCC
TCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTCAGAAATAAAAGTCA
ATTTTACTTAGAAGAATGTGGAAATATTTAGGTTATATTTAATTTCCTGT
TCTTGTATTCTCAAGTTGGAAACGGATTGGATTCTGGTCTTAAACGAAAA
GAATCCTGCCTTTTCTCTTTGGAGAGGTGTACTAGAGAATGAAAATTGCA
TTAGGAAAACTTAGGAAAATTGCATCCTATATTCTAATTTTCATGGGTTT
TGAATATATTTCTTAAAAAAATTTTTTTTTAAACCCAAAAGAACAGACTC
TTGTTGCACTGTTTCATCTAATGAAGACCTAAAGTACATCTGCTAATTTA
CGGTTTCATATGAATGGAGACAAAGAAATGCAGTGTCAAATTTCTGTTGT
TTCTGATTTGCAGGAGCATCGTATAATAGACATTCCTGGCGCAGCCCTAA
TCGTTGAGATTGTAGCATAAGGTTTATGTTCACCTTAAAATCCTACTGAC
AATTTCATTCTTTATGAGGCGAGCTATTTGTTTTCAATCTTGCGATACTT
ATTAACTTATTAATCTATTTACTCAGTTTTTTCCATGAACACGCGGATTT
TTTTCCTCGTTCTTTAACTCTTGTCGCCTTCTTTCTCCTTCCCACTCCCA
TTTTTTTTTACTTTTCCTGCATTATTTCCCCTCTCTTCATCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_e07.b1 MSMg01no461_e07.b1 CHROMAT_FILE:
MSMg01no461_e07.b1 PHD_FILE: MSMg01no461_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:48 2005
         (239 letters)



>mm_chr6_47325417_47326055
          Length = 639

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggcactccacacgcagtgcacaggcacaaacacagactaaacaccacacatgtaaag 60
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ataggcactccacacacagtgcacaggcacaaacacagacaaaacaccacacatgtaaag 260

                                                                       
Query: 61  caaatatttctttttaagctggatattgtcagatttaaaggaaactccaattccccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatatttctttttaagctggatattgtcagatttaaaggaaactccaattccccaaat 320

                                                                       
Query: 121 tccaaaaggcagcccaaatatctagaaataagttcaacctggactacaggattatttctg 180
           |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 321 tccaaaaggcagtccaaatatctagaaataagttcaacctggactacaggaggatttctg 380

                                                                   
Query: 181 gcagtaaggtaaaagccagcattcctcaggaacttgtaaaaccagctcccatctgc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtaaggtaaaagccagcattcctcaggaacttgtaaaaccagctcccatctgc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_e07.g1 MSMg01no461_e07.g1 CHROMAT_FILE:
MSMg01no461_e07.g1 PHD_FILE: MSMg01no461_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:49 2005
         (239 letters)



>mm_chr6_47542979_47543617
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattcagaaataaaagtcaattttacttagaagaatgtggaaatatttaggttatattt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atattcaggaataaaagtcaattttacttagaagaatgtggaaatatttaggttatattt 380

                                                                       
Query: 61  aatttcctgttcttgtattctcaagttggaaacggattggattctggtcttaaacgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatttcctgttcttgtattctcaagttggaaacggattggattctggtcttaaacgaaaa 320

                                                                       
Query: 121 gaatcctgccttttctctttggagaggtgtactagagaatgaaaattgcattaggaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaatcctgccttttctctttggagaggtgtactagagaatgaaaattgcattaggaaaac 260

                                                                      
Query: 181 ttaggaaaattgcatcctatattctaattttcatgggttttgaatatatttcttaaaaa 239
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 259 ttaggaaaattgcatcctatattctaattttgatgggttttgaatatatttcttaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)