BAC Information

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BAC

Clone NameMSMg01-461H09
Chromosome6 (Build37)
Map Location 42,767,941 - 42,768,179
singlet/doubletsinglet
Overlap geneOlfr450
Upstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1
Downstream geneOlfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H09.T7 (MSMg01no461_h09.b1)MSMg01-461H09.TJ (MSMg01no461_h09.g1)
ACCAG546578AG546579
length732720
length of high quality
(start - end)
234 (82 - 315)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no461_h09.b1 PHD_FILE: MSMg01no461_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:04 2005CHROMAT_FILE: MSMg01no461_h09.g1 PHD_FILE: MSMg01no461_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCCCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAACATAT
CCGCGGAATTCGGGGTTTCCATAAAAAAAAATATCTACACTAGAATGGTA
TATCTTAATGAACCTAAACATGTGCCATAGGGTCTCAAAGCTTCCAAATC
TTTCCCAAGAGCACAGCACAATGTAGAAAACAATATTGTATGAATCAGGT
AATTTTCTGTACTTGGGTTAACATTCCTGCAGAGAGCACACCACTGGGAT
GGTTCAGCAGAAGCTAAGCAGTTCATTGAACTAAGTCTCTACACTCATGC
TCAATAAGAGTGTTTAACCTTTCTCAGGATACATGATTCCCCTAACCTCT
GTGTCACCCATGACCTGATCCTCCTGCTGACACTGCTTCTCAGCATATCC
AAATCTAGCTGTTTTGCTGTCCAGGAGACTATCAGTGGATAGTTGATTCT
GGCTCCCTGATTTGCTTTGTTTCCTTTCTCTAGTTCTACTGACTAGAATA
GTCTCTGAGTATGCTTTTCCTTTAATTCCAGTCTGCCCAGCCAGATAAAT
CACTGGATATATTTACTGCCATCTATGGCGTTTATGAAGAATAAGCTTTT
CCTGGTGACATGGCAACGTATAATTGGTCAGCTTTTACCTCTATTTTTGT
TTTTTTTTATTGGAGTCTCCACTCATAAATCGAATCCTGCTCTTTAATAT
CACAACTTCTACTTTCCATATCTCTCCCCTTT
TCTCACAATGAAGTGNGAGGCCTGGCGGCCGCCTGTTTCAATAATTTAGG
TGAACTATAGAAGTACAGCGAAATTCACTGATGGAGACAGTAATCACCTT
TCGTCTTCCTCTGTGTCACAATGTCATCAATCACTTTGCCTGTGAGACCC
TTGCAGTGCTTCGGCTAGCCTGTGTAGACATCTCTTTCAACAAGGTCATG
GTGGCCATCTCAGGGTTTCTGGTGATCATGCTTCCTTGTTGCCTGGTTCT
ATTCTCTTATACTCAGATAGTCATTGCCATTCTGCGCATTCGATCTACTC
AGGGACGTCACAATGTTTTTGTAACTTGTGCCTCTCACCTCACTGTGGTT
TGTATGTGCTTTGGGGCCACAATCTTCACTTACCTAGGACCACGTTCTGC
CTCATCTGAGGATAAGGACAAGATGGTTGCTCTGTTCTATGCTGTGGTGG
CACCCATGTTGAATCCTGTGATCTACAGCTTGAGGAATAAAGAAGTTATG
GCTGCTCTTACCAAATTTGTTTGAAAATTAAGGTAAAAGAATGGAGATCT
CCATAGGACTGTGACAACTGTCTTCAAAATCAAACCAACGAATCTTATAT
ATGGACGCCAAATTTTTTGAGGCTTCCACCAGGGATAATTCTTTCATTGC
TATCATTAAACCTGTGATCTTATCATCCTCATTCCCCTTGTTTCAATGAA
CATCTGCCACATCTACAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h09.g1 MSMg01no461_h09.g1 CHROMAT_FILE:
MSMg01no461_h09.g1 PHD_FILE: MSMg01no461_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:04 2005
         (239 letters)



>mm_chr6_42767741_42768379
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactgatggagacagtaatcacctttcgtcttcctctgtgtcacaatgtcatcaatc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 attcactgatggagacagtaatcaccttccgtcttcctctgtgtcacaatgtcatcaatc 260

                                                                       
Query: 61  actttgcctgtgagacccttgcagtgcttcggctagcctgtgtagacatctctttcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttgcctgtgagacccttgcagtgcttcggctagcctgtgtagacatctctttcaaca 320

                                                                       
Query: 121 aggtcatggtggccatctcagggtttctggtgatcatgcttccttgttgcctggttctat 180
           ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 321 aggtcatggtggccatctctgggtttctagtaatcatgcttccttgttgcctggttctat 380

                                                                      
Query: 181 tctcttatactcagatagtcattgccattctgcgcattcgatctactcagggacgtcac 239
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttatactcggatagtcattgccattctgcgcattcgatctactcagggacgtcac 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)