BAC Information

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BAC

Clone NameMSMg01-461L12
Chromosome6 (Build37)
Map Location 17,896,546 - 17,896,986
singlet/doubletsinglet
Overlap genenone
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461L12.T7 (MSMg01no461_l12.b1)MSMg01-461L12.TJ (MSMg01no461_l12.g1)
ACCAG546776AG546777
length751732
length of high quality
(start - end)
342 (75 - 416)438 (77 - 514)
definitionCHROMAT_FILE: MSMg01no461_l12.b1 PHD_FILE: MSMg01no461_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:25 2005CHROMAT_FILE: MSMg01no461_l12.g1 PHD_FILE: MSMg01no461_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGTGAGTTGCNCGGA
ANTCNNTTATTTTCCAAAACTAGAGATTTATTTATTTGTTTTATGTATGT
GAGTACACTGTGGTTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCC
ATTACATATGGTTGTGAGCCACCATGTGGTTGCTTGGAACTGAACTCAGG
ACCTCTGGAAGACCAGTCAGTGCTCTTAACCACTAAGCCATCTCTCCTGC
CCTTAAATGGAATTCTTTTTTTTTTAAATTTTTTTTAAAAATTTTTTTTT
TTTTATTTTTTTTCCTTTTTATTAGGTATTTAGCTCATTTACATTTCCAA
TGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCAC
CCACTCCCCCTTTTTGACCCTGGAGTTCCCCTGTACTGGAGCATATTAAG
TTTGCGCGTCCAATGGTCCTCTCTTCCTACTGTTGGCCGACTACGCTCTC
TTTTTGATCTTAAGCCCCTTTACTCAATAGTTCCGAACTCCTGGCTACTT
TCATAAGCCTTCTCCCCTCACCTTTTCTGTCTTCCTTTTTGCTCCTTCTG
TATCTTCCCTATGCTCTTCTGTTGTAATACCCTGTGTTTTTTTTTTTTTT
TTACGACTCTCCGCATATCCACATTTGTGGCTTCGCCAATGCCCTATTTC
TCATTATGATTCTCCACATTACTTACTATCTTCTTCTCCCTGTGTTCCTT
N
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGTGCTTATTCCTAAGAAA
AACGTAAACCAGGAACTTCCAAATATCTGTAAAATAAAAAGAAGAAACAT
TCATAGCAAAGTGGGAGAAGGAACTTACTCTCCAAAATTTGTATATATTT
CTATATAGTCTTTTTTTTTTTTTAATAAAAGGATTCGGCTCTGTTGGCTG
GCTTTCAACTCTTGATTCTCCTGTCTCAATATCTGGAGTGCCAAGCTTAT
AGGCATGTATCACAAGGGTTTTATGTACATCTTTTGTTCTCCATGAAACT
AATATTTACTTTTCATTCACCTTGTTTACACTTGCTTAAGTATCATCAGC
TAAGTGGTGATAAGTGGCCTTAAGCCCACGTCGTGGTTGTAGTGATTGTT
TTGCCCAGTCAGTGGTTGAAGCAAGGAGAACTTAATTCTGATTAGTACTC
TGTGGCTAGCTGAGTACTAGCCAGGCAGACTGGGTAACTGCAAAACTGCA
GACCAGTCCACTGCCTTGGAATGAGCAAGCATCCGTGAACTTAGAGCCTC
TTTGCATTCCCCTCCAAGTTGTTCTTGGGTTACAGCTTTTTTCAGCAATG
CCCTGCCTGCCCCTCCTTTTCAGTCTACTTCAGGATTTCCTTAGATTTTT
TATTGATGCGATTTCTGCCCTTTTTTGCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_l12.g1 MSMg01no461_l12.g1 CHROMAT_FILE:
MSMg01no461_l12.g1 PHD_FILE: MSMg01no461_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:25 2005
         (438 letters)



>mm_chr6_17896212_17897049
          Length = 838

 Score =  756 bits (391), Expect = 0.0
 Identities = 426/445 (95%), Gaps = 14/445 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   caagtgcttattcctaagaaaaacgtaaaccaggaacttccaaatatctgtaaaataaaa 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 775 caagtgcttattcctaagaaaaatgtaaaccaggaacttccaaatatctgtaaaataaaa 716

                                                                       
Query: 64  agaagaaacattcatagcaaagtgggagaaggaacttactctccaaaatttgtatatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agaagaaacattcatagcaaagtgggagaaggaacttactctccaaaatttgtatatatt 656

                                                                       
Query: 124 tctatatagtc------tttttttttttttaataaaaggattcggctctgttggctggct 177
           ||||| |||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tctatctagtctttttttttttttttttttaataaaaggattcggctctgttggctggct 596

                                                                       
Query: 178 ttcaactcttgattctcctgtctcaatatctggagtgccaagcttataggcatgtatcac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 595 ttcaactcttgattctcctgtctcaatatctggagtgccaagcttataggcatgtattac 536

                                                                       
Query: 238 aagg----gttttatgtacatcttttgttctccatgaaactaatatttacttttcattca 293
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagggccag----atgtacatcttttgttctccatgaaactaatatttacttttcattca 480

                                                                       
Query: 294 ccttgtttacacttgcttaagtatcatcagctaagtggtgataagtggccttaagcccac 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccttgtttacacttgcttaagtatcatcagctaagtggtgataagtggccttaagcccac 420

                                                                       
Query: 354 gtcgtggttgtagtgattgttttgcccagtcagtggttgaagcaaggagaacttaattct 413
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 419 gtcgtggttgtagtggttgttttgcccagtcagtggttgaagcaaggagaacttcattct 360

                                    
Query: 414 gattagtactctgtggctagctgag 438
           |||||||||||||||||||||||||
Sbjct: 359 gattagtactctgtggctagctgag 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)