NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCAAAAATTTGGGGAGACTGAGAAGCATTCTTCTGGATAT
GACCAGAGCGCGATGCATTTCATCTAGATTGATTTTGCTCATGCAAAAGT
GAGAACTCAGAAGTATGGTAGGGGAAGCTTAGGGAGCCTGTAGACCTTTA
AAACAATTTCTCTGTTAGGACGCATCTTATATATGTCTTAATAGTTTTAT
AGTATGGGAGACTTTTACTGAGCGTCAAGTCACCAGCAGGCTTACAAGGA
GACTTCTAATAATTGTCATTCCTCACATCTCCCACTGCTGGATCTATCAG
TTTGCTACTCTCCATGTCTCACACTTTAAACATGAATGTTGGGGATCCAA
ACTCAGATCTTCATGCTTCTATAACATGCACTTCACTGAGTGAGCCATAT
CTCTGGCTCCAGATTATTGGATTCTCTGGTCACTAAAGTAATTTTCAGTG
CTCGGAATTGAACCTCAAGCCTCAAGAATGTGAGGCAAGCTCTTTGACAC
TGGACTATATTCTCAGGCATATAGTAAAGATTTCAGGAAAATGCCTGTAA
AATCACTATTAGTAGAAGTGTATTTCATCTCATCATCAAGGTTTTGATTT
CAGCAACAAAAAGGTTTCCGCAATCTTTTAGGGAAAAAGGGTTATTTGGA
TTAACCTTCCCCCCCCTGGTTTTCCTTTGAAAAAAACCAGAACGGGACTT
CCCCCGGGCGGGGGT

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTAATGGGGTTGTTTTAATTTCTGGAGTTCAGCTTCTTGACCTCTTTG
TATATATTGGCTATTAGTCCCATATCAGATTTAGGATTGGTAAAAATTCT
TTCCCAATATGTTGGTGACCTTTTTGTCTTATTGACAGTATCTTTTGCCC
TACAGAATTCCAATGGAAGGAGTTGCAGAGACAAAGTTTGGAGCTAAGAC
AAAAGGATTGGCCGTCCAGAGACTGTCCCACCTGGGTGTCCATCCCATAA
CCAGCCACCAAATGCAGACACTATTGCATATGCCAGCAAGATTTTGCTGA
AAGGACCCTGATGTAGCTGTCTCCTGTGAGGCTATGCCAGTGCCTGACAA
ATACAGAAGTGGATGCTCACTGTCATCTATAGGATGNAACACAGGGCCCC
CAATGAAGGAGCTAGAGAAAATACCCAAGGAGCTAACGGGGTCTGCAACC
CTATGGGTGGAACAACTATATGAACTATTCTGTACCCCTAGAGCTCGTGT
CCCTAGCTGGCATAGTAGCAAAAAAATGGCCTATTCCCCCCCTTTTGTGA
AGAAAAAACCCCCTGGTTCTTGTCAAATTTTTTGTGCCCCCCTAAACGGG
GTAAGCTCTATCCCCTAAAACCGTGATGGTGTTTTGCTATCTCTTCTCTT
CCTTTTTCTCTTATAAACTTTTTTT

Query= MSMg01no462_b22.b1 MSMg01no462_b22.b1 CHROMAT_FILE:
MSMg01no462_b22.b1 PHD_FILE: MSMg01no462_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:00 2005
         (502 letters)



>mm_chr6_8956998_8957899
          Length = 902

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaaaaatttggggagactgagaagcattcttctggatatgaccagagcgcga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaaaaatttggggagactgagaagcattcttctggatatgaccagagcgcga 264

                                                                       
Query: 65  tgcatttcatctagattgattttgctcatgcaaaagtgagaactcagaagtatggtaggg 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 tgcatttcatctagattgattttgctcatgcaaaagtgagacctcagaagtatggtaggg 324

                                                                       
Query: 125 gaagcttagggagcctgtagacctttaaaacaatttctctgttaggacgcatcttatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagcttagggagcctgtagacctttaaaacaatttctctgttaggacgcatcttatata 384

                                                                       
Query: 185 tgtcttaatagttttatagtatgggagacttttactgagcgtcaagtcaccagcaggctt 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 tgtcttaatagttttatagtatgggagacttttactgagcgtcaagccaccagcaggctt 444

                                                                       
Query: 245 acaaggagacttctaataattgtcattcctcacatctcccactgctggatctatcagttt 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaggagacttctaataattgccattcctcacatctcccactgctggatctatcagttt 504

                                                                       
Query: 305 gctactctccatgtctcacactttaaacatgaatgttggggatccaaactcagatcttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctactctccatgtctcacactttaaacatgaatgttggggatccaaactcagatcttca 564

                                                                       
Query: 365 tgcttctataacatgcacttcactgagtgagccatatctctggctccagattattggatt 424
           ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 565 tgcttctataacatgcatttcactgagtgagccatatctctggctccaaattattgaatt 624

                                                                       
Query: 425 ctctggtcactaaagtaattttcagtgctcggaattgaacctcaagcctcaagaatgtga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctggtcactaaagtaattttcagtgctcggaattgaacctcaagcctcaagaatgtga 684

                             
Query: 485 ggcaagctctttgacact 502
           ||||||||||||||||||
Sbjct: 685 ggcaagctctttgacact 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)