BAC Information

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BAC

Clone NameMSMg01-462G17
Chromosome6 (Build37)
Map Location 118,554,767 - 118,555,268
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462G17.T7 (MSMg01no462_g17.b1)MSMg01-462G17.TJ (MSMg01no462_g17.g1)
ACCAG547310AG547311
length730741
length of high quality
(start - end)
441 (167 - 607)506 (78 - 583)
definitionCHROMAT_FILE: MSMg01no462_g17.b1 PHD_FILE: MSMg01no462_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:25 2005CHROMAT_FILE: MSMg01no462_g17.g1 PHD_FILE: MSMg01no462_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATAATTTGCGGCGCTATACGAATCACTAATCAAGAGGATCCGC
GGAATTCATGAATTACCACACACACACATTTATATTTTGAGATGCCTTGA
CTACCTTAAGGGCAGAGCACTTCCAAATTCTTCCCGTGGCTAGCATACAC
TGCCCTCTGGTATTCTTGGATTAATACTTGCTAAATCTGTATTTTTATCT
CTGCTGCCCAAGACCCAATCGGGGGAGTAGCCCCTGGGGCCACTTTCTCG
GATTCTTACATATTGCAGGCTCCTTCATGGCACGCGGTCCAACTACTTCC
CTTATAGGGTGTAATTCTTCTTCTCCCTCTGTCTTTCTTGCCTGGGAATC
CTAAAAGTCTCATCTCTATCATCCTGCCCAGCTTTTAGCTGTTGGCTCTT
CATTGATCAATCAAATACCAATTGGAGACAGGGACCCTCAGTATCTGGAT
ACGTGTGATTTTGGGAACCAAATTAAGACAGAGCATTAGAACCAATCTCC
AACAGGTTTGTTAGGTACTTTATTTTCTTTGAAGATGTGAATAGGAGTGT
GCCCATGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAAAGATGT
AAATAGGAGTGTGTCCATGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTTCTCTTTTTATTCCCTTTCCATTCTCACTCTACTGTTG
ACTGTCTCATAAATATCTATCTTCACTCTG
TTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTCGACTTAGGCATCCAGCT
CAGGCCTGGAAGAACCTAGGACTCCAAGTCCATTCCCAATTTACCTCATC
AGGAATCTCCAGGGTTTTCTCTTCCATGTAGAAATGAGTCCCTGCCCCAC
AGCAAGCCCAGAACTTCTGTAGAGTTGGGTTCTCCAGTTGGCTACTCTCA
AGGGATAGTGATGATCAGGAAAGCCATCGCAGGTCCCCAGGCTCAGCCCA
ACCATCTGTCGCTCTCTTTTAAGATGAAGGGGCCACTTGCCTGGCATGAA
ACATTCTCCTAGACGCTTACAGCTTCCCTACCATTTAGCACACTCCTAAG
ATCCAGACTATGTCATGTGTGGTCTGGTGCATCCAGCCTAGCAAGGACTC
GTGTCAAGCCAGTCTGCCTGGCTGGAAGGGAAATCGCCAACCTTGTGTTG
GCAGTGAGAAGACTGGCTATTTCATGGTAAGTGGAACCAACGAGACTTAG
TAATGTCTATTCAGGAGGGGTGAAAAAAAATAAGATGGGAAGTAACCTTG
ACAAGATCCAACCTTTCCTGTGAGGGAAAAATGAAGGGAAAAAAAGAACA
GTCATGTACAGACCGGAACAAGCAGTTTTACACATAAAAGAAGTTTTAAG
GGGCTGAAAAATATCCACGGTAATCTGTTTCACATCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_g17.g1 MSMg01no462_g17.g1 CHROMAT_FILE:
MSMg01no462_g17.g1 PHD_FILE: MSMg01no462_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:26 2005
         (506 letters)



>mm_chr6_118554567_118555472
          Length = 906

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/506 (98%), Gaps = 8/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtcgacttaggcatccagctcaggcctggaagaacctaggactccaagtccattccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agtgtcgacttaggcatccagctcaggcctggaagaacctaggactccaagtccattccc 643

                                                                       
Query: 61  aatttacctcatcaggaatctccagggttttctcttccatgtagaaatgagtccctgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aatttacctcatcaggaatctccagggttttctcttccatgtagaaatgagtccctgccc 583

                                                                       
Query: 121 cacagcaagcccagaacttctgtagagttgggttctccagttggctactctcaagggata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 582 cacagcaagcccagaacttctgtagagttgggttctccagttggctactctcaagggaca 523

                                                                       
Query: 181 gtgatgatcaggaaagccatcgcaggtccccaggctcagcccaaccatctgtcgctct-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 522 gtgatgatcaggaaagccatcgcaggtccccaggctcagcccaaccatctgtcgctctca 463

                                                                       
Query: 239 --cttttaagatgaaggggccacttgcctggcatgaaacattctcctagacgcttacagc 296
             |    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cac----aagatgaaggggccacttgcctggcatgaaacattctcctagacgcttacagc 407

                                                                       
Query: 297 ttccctaccatttagcacactcctaagatccagactatgtcatgtgtggtctggtgcatc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttccctaccatttagcacactcctaagatccagactatgtcatgtgtggtctggtgcatc 347

                                                                       
Query: 357 cagcctagcaaggactcgtgtcaagccagtctgcctggctggaagggaaatcgccaacct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagcctagcaaggactcgtgtcaagccagtctgcctggctggaagggaaatcgccaacct 287

                                                                       
Query: 417 tgtgttggcagtgagaagactggctatttcatggtaagtggaaccaacgagacttagtaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgtgttggcagtgagaagactggctatttcatggtaagtggaaccaacgagacttagtaa 227

                                     
Query: 477 tgtctattcaggaggggtgaaaaaaa 502
           ||||||||||||||||||||||||||
Sbjct: 226 tgtctattcaggaggggtgaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)