BAC Information

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BAC

Clone NameMSMg01-462H24
Chromosome6 (Build37)
Map Location 71,885,067 - 72,049,318
singlet/doubletdoublet
Overlap geneRpo1-4, LOC668057, St3gal5
Upstream geneLOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3
Downstream geneAtoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H24.T7 (MSMg01no462_h24.b1)MSMg01-462H24.TJ (MSMg01no462_h24.g1)
ACCAG547372AG547373
length734755
length of high quality
(start - end)		584 (81 - 664)474 (82 - 555)
definitionCHROMAT_FILE: MSMg01no462_h24.b1 PHD_FILE: MSMg01no462_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:32 2005CHROMAT_FILE: MSMg01no462_h24.g1 PHD_FILE: MSMg01no462_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,885,067 - 71,885,650)(72,048,845 - 72,049,318)
sequence
NNNNAAATTAGTCCTCATGTCACNAAACGACTCACTATATTTCGNAAATC
CGCGGAATTCAGAGACTCTCCTCTCCTCCTTCCATCATGTGTTCTCTCCT
TCTGTCACGTGGGTCCCAGCGATCAAAGTCAGGTGTCAGGCTTGGTAGAA
AGTGCCTTTACCCACCGAGTCATCTCTGGCTGGCAGAGGCAGGAGGATCA
TAAGTTTGAGACCAACTTTGACAACACAACAAGACAGTATTTACTAAAAT
GTTTATGCAGAAGTAATATGTGTTTTAATATGAACAATACTAAGATCTGG
GGCGGTTAAGATGTGTTACTCAGTGTCTCTACGTCTTTTCTTTTAAGTCC
ACACCCCAGAGGCCTAGCAGTGAGTACCCACACGCCTTTTCCTATGTGCA
GCTGCCCTAGATGTAGTTGATTTCCAGTCGTTGCATCCTGCCTCCTTACT
GGGATTTTGATTTTGTTGGTTCTTTTAGCATCACACTGAGACTGGCATTG
ACCTAACCTAACCTCTATAATCACTGTAGCATTCTGTAATGTGTATACAC
TGGAATTCACTGCCATTTCTGTGGGACAGTTAGAATAGTTCTACTTTTCT
GCCATTGTAAGCTGGGCTGCATAAACATACATTCTTTTTGCTAACCTTGG
CATTTTGCTTACATCTTTTTTCCTTCTGAACAGCTAAGAGGATATGTTTT
ATATGTCATGGGGGGCATGGGACTTATTTTCAGA

TTCTCAGCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAATCAAAGCCAGCCTGAACAGCA
TGCTATCCCCGAGTCAAAAACCCAAACCAACCAACCAACCAACGGACCGA
CCAACCAACAAAACAGCCACCCAAACCTCCAATCATCTCAATTTCTTTTC
AAGTCTCAAAGAAAACACTATCAGCCTGATAGCCACAGCACCGACCACAT
AGCAGACATGAGTGTCAGGAGATGCAGCACTCTGACTACAGTGCTCTGGA
AGCTCATATTAATATTCTCTTGACCAAAAACTTGGAAATCAGACAATTCC
TAGCCCTGCAACCAGCAATGTGAGAAACCATTCTGAGCTGTCAGGATATG
GAATTACACAAAAGAAACCAAAACCTACTTTTCTGGTCCTTTCTTTCAGC
AGACAAATGCCTCTTCTCAGGCCCAGCATTTGCGTAGGGCTGCAGGTAGA
AGAGGATTTACAGTCATAAACCAAGGGAAGGCTTGGCTAGACACCAGAGG
GCAGAGATGAGTGTGAGTCTCCTTCCTTTGTAAGTCTAAAACCCAGCACA
GCTCTTGGCTGAAGGAACCTGAAAACCATCGGTCCCAGAAAAAGCACCAC
ACATAAAAATGCCTTTTTCCCTCCTTTTAAAGACATCCTACTTACATTTT
ACACCCTATATTTTGCAAAGGCAAAAATTCCTATATGGGGAAATGAGAAC
CGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h24.b1 MSMg01no462_h24.b1 CHROMAT_FILE:
MSMg01no462_h24.b1 PHD_FILE: MSMg01no462_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:32 2005
         (584 letters)



>mm_chr6_71884867_71885850
          Length = 984

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatcatgtgttctctccttctgtcacgtgggtcccagcgatcaaagtcaggtgtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatcatgtgttctctccttctgtcacgtgggtcccagcgatcaaagtcaggtgtcagg 260

                                                                       
Query: 61  cttggtagaaagtgcctttacccaccgagtcatctctggctggcagaggcaggaggatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggtagaaagtgcctttacccaccgagtcatctctggctggcagaggcaggaggatca 320

                                                                       
Query: 121 taagtttgagaccaactttgacaacacaacaagacagtatttactaaaatgtttatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtttgagaccaactttgacaacacaacaagacagtatttactaaaatgtttatgcag 380

                                                                       
Query: 181 aagtaatatgtgttttaatatgaacaatactaagatctggggcggttaagatgtgttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaatatgtgttttaatatgaacaatactaagatctggggcggttaagatgtgttact 440

                                                                       
Query: 241 cagtgtctctacgtcttttcttttaagtccacaccccagaggcctagcagtgagtaccca 300
           ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgcctcaacgccttttcttttaagtccacaccccagaggcctagcagtgagtaccca 500

                                                                       
Query: 301 cacgccttttcctatgtgcagctgccctagatgtagttgatttccagtcgttgcatcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacgccttttcctatgtgcagctgccctagatgtagttgatttccagtcgttgcatcctg 560

                                                                       
Query: 361 cctccttactgggattttgattttgttggttcttttagcatcacactgagactggcattg 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccttactgggattttgattttgttggttcttttagcatcacactgagactggcattg 620

                                                                       
Query: 421 acctaacctaacctctataatcactgtagcattctgtaatgtgtatacactggaattcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctaacctaacctctataatcactgtagcattctgtaatgtgtatacactggaattcac 680

                                                                       
Query: 481 tgccatttctgtgggacagttagaatagttctacttttctgccattgtaagctgggctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccatttctgtgggacagttagaatagttctacttttctgccattgtaagctgggctgc 740

                                                       
Query: 541 ataaacatacattctttttgctaaccttggcattttgcttacat 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaacatacattctttttgctaaccttggcattttgcttacat 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no462_h24.g1 MSMg01no462_h24.g1 CHROMAT_FILE:
MSMg01no462_h24.g1 PHD_FILE: MSMg01no462_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:32 2005
         (474 letters)



>mm_chr6_72048552_72049425
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagccagcctgaacagcatgctatccccgagtcaaaaacccaaaccaaccaaccaacca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 767 aaagccagcctgaacagcatgctatccccgactcaaaaacccaaaccaaccaaccaacca 708

                                                                       
Query: 61  acggaccgaccaaccaacaaaacagccacccaaacctccaatcatctcaatttcttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acggaccgaccaaccaacaaaacagccacccaaacctccaatcatctcaatttcttttca 648

                                                                       
Query: 121 agtctcaaagaaaacactatcagcctgatagccacagcaccgaccacatagcagacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agtctcaaagaaaacactatcagcctgatagccacagcaccgaccacatagcagacatga 588

                                                                       
Query: 181 gtgtcaggagatgcagcactctgactacagtgctctggaagctcatattaatattctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtgtcaggagatgcagcactctgactacagtgctctggaagctcatattaatattctctt 528

                                                                       
Query: 241 gaccaaaaacttggaaatcagacaattcctagccctgcaaccagcaatgtgagaaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaccaaaaacttggaaatcagacaattcctagccctgcaaccagcaatgtgagaaaccat 468

                                                                       
Query: 301 tctgagctgtcaggatatggaattacacaaaagaaaccaaaacctacttttctggtcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctgagctgtcaggatatggaattacacaaaagaaaccaaaacctacttttctggtcctt 408

                                                                       
Query: 361 tctttcagcagacaaatgcctcttctcaggcccagcatttgcgtagggctgcaggtagaa 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctttcagcagacaaatccctcttctcaggcccagcatttgcgtagggctgcaggtagaa 348

                                                                 
Query: 421 gaggatttacagtcataaaccaagggaaggcttggctagacaccagagggcaga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaggatttacagtcataaaccaagggaaggcttggctagacaccagagggcaga 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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