Query= MSMg01no462_j10.b1 MSMg01no462_j10.b1 CHROMAT_FILE:
MSMg01no462_j10.b1 PHD_FILE: MSMg01no462_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:39 2005
(516 letters)
>mm_chr6_110940128_110941043
Length = 916
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%)
Strand = Plus / Plus
Query: 1 atctatctgtctccactggaagtgaaaggggttatgcacttgtggaacacactaaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctatctgtctccactggaagtgaaaggggttatgcacttgtggaacacactaaatcac 260
Query: 61 cctccagtgtacctatcagcaataggcatttgtataaatgtataaattgtataaaaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccagtgtacctatcagcaataggcatttgtataaatgtataaattgtataaaaccaa 320
Query: 121 agaaactttttcttctgttcttcactgtgttcaattgcttcccccatttgtctactttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaactttttcttctgttcttcactgtgttcaattgcttcccccatttgtctactttcc 380
Query: 181 tattctgaaagtcatcatgctgtgctgtactccctagtctgctcttaggggatttgcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctgaaagtcatcatgctgtgctgtactccctagtctgctcttaggggatttgcatg 440
Query: 241 acaatatttttctattttgaggatttttattattttattgaaaacatttgcttcaagatc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaataaaattctattttgaggatttttattattttattgaaaacatttgcttcaagatc 500
Query: 301 aagttgtacaaagcctagaagtggcattgctttaatttgtcccataaataaacttcactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttgtacaaagcctagaagtggcattgctttaatttgtcccataaataaacttcactt 560
Query: 361 accattaagtatatttgaaggtcattctgaaggacattttgatttcattgacttagttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accattaagtatatttgaaggtcattctgaaggacattttgatttcattgacttagttga 620
Query: 421 ggttaaagaagaaccaaatcttagaaaaatacagctttcaactgcagtagctgtctatga 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ggttaaagaagaaccaaatcttagaagaatacagctttcaactgcagtagctgtctatga 680
Query: 481 atttatttaaattatttaaatactaattaaagtact 516
|||||||||||||||| |||||||||||||||||||
Sbjct: 681 atttatttaaattattcaaatactaattaaagtact 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_j10.g1 MSMg01no462_j10.g1 CHROMAT_FILE:
MSMg01no462_j10.g1 PHD_FILE: MSMg01no462_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:39 2005
(503 letters)
>mm_chr6_111136310_111137212
Length = 903
Score = 913 bits (472), Expect = 0.0
Identities = 496/504 (98%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 1 gcaggtagtatctatgtgtttacatgtcgatatgcatacatatataacaaaagtaattaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcaggttgtatctatgtgtttacatgtcgatatgcatacatatataacaaaagtaattaa 485
Query: 61 agaataaattatgaattgagatgaagcatggacaaaggatgaattgaaggaagaaaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaataaattatgaattgagatgaagcatggacaaaggatgaattgaaggaagaaaagga 425
Query: 121 aagggtggaaatggatgcaaacataatacttatacatgtaattattgaaaacattataat 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 aagggtggaaatggatgcaaacataatacttatacgtgtaattattgaaaacattataat 365
Query: 181 gaagaatatgaatcacagaaaaagagttcttcaatacattttaattcaaaatgcaagaca 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaagaatatgaatcacagaaaaatagttcttcaatacattttaattcaaaatgcaagaca 305
Query: 241 aaaatttgcttatttgtgagtaggcaatcagtgaggatttaataaa-tctcttttcatag 299
|||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 304 aaaatttgctgatttgtgagtaggcaattagtgaggatttaa-aaagtctcttttcatag 246
Query: 300 ctagttaatacttttagaaatggaagtgaaataaaagacctctaagatgccctacacata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctagttaatacttttagaaatggaagtgaaataaaagacctctaagatgccctacacata 186
Query: 360 taatgctagccctcaggagcctgacataggattagagagttcaaggacatcctgagatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 taatgctagccctcaggagcctgacataggattagagagttcaaggacatcctgagatac 126
Query: 420 agagcaaagttgtgtgtcaaaaaataattaagtaataattaataagcttactaagaatgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agagcaaagttgtgtgtcaaaaaataattaagtaataattaataagcttactaagaatgt 66
Query: 480 taaggggaatttccttttctttag 503
||||||||||||| ||||||||||
Sbjct: 65 taaggggaatttcattttctttag 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
