Query= MSMg01no462_m13.b1 MSMg01no462_m13.b1 CHROMAT_FILE:
MSMg01no462_m13.b1 PHD_FILE: MSMg01no462_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:54 2005
(562 letters)
>mm_chr6_54660386_54661347
Length = 962
Score = 1004 bits (519), Expect = 0.0
Identities = 558/585 (95%), Gaps = 23/585 (3%)
Strand = Plus / Minus
Query: 1 gtgctctgtagcagtctgatggaacatttgatatctggccagtgcatttgatccatcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtgctctgtagcagtctgatggaacatttgatatctggccagtgcatttgatccatcatt 769
Query: 61 tagcttatctttgaagtggtttccagtttagatgatctacctaaagatagaaacagggta 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tagcttatctttgaaatggtttccagtttagatgatctacctaaagatagaaacagggta 709
Query: 121 tggaagttattattgtaccaggacctatctgttccttctgcctattagtgttttataaaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tggacgttattattgtaccaggacctatctgttccttctgcctattagtgttttataaaa 649
Query: 181 ttgagagctacaacattcagtgtacatacatttataattggtataaatttattaatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttgagagctacaacattcagtgtacatacatttataattggtataaatttattaatatgt 589
Query: 241 attacctttctttatctgagtaatttttatttaaagttgaatctgtaacttcagctcatt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agtacctttctttatctgagtaatttttatttaaagttgaatctgtaacttcagctcatt 529
Query: 301 tcagcttccatgttcttgacagatgaactaccatgctttgtgggcatctttgccagtgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcagcttccatgttcttgacagatgaactaccatgctttgtgggcatctttgccagtgag 469
Query: 361 gtgtgtttcttgatgactacacagttgattcta----------------------gtttt 398
||||||||||||||||||||||||||||||||| |||||
Sbjct: 468 gtgtgtttcttgatgactacacagttgattctagttttgttttttgttttgttttgtttt 409
Query: 399 gttttg-tttgttgttttacaaaagcagccagtgcttctccattaatgagtgaagtaatt 457
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 408 gttttgttttgttgttttacaaaagcagccagtgcttctccattaatgagtgaagcaatt 349
Query: 458 tacagccaagactattactgagaaatatttactaattcttaccaccttgtttttcctagt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tacagccaagactattactgagaaatatttactaattcttaccaccttgtttttcctagt 289
Query: 518 tgattggattgttggttttcaacatctttcttcccagctagtaac 562
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgattggattgttggttttcaacatctttcttcccagctagtaac 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_m13.g1 MSMg01no462_m13.g1 CHROMAT_FILE:
MSMg01no462_m13.g1 PHD_FILE: MSMg01no462_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:54 2005
(329 letters)
>mm_chr6_54487102_54487830
Length = 729
Score = 588 bits (304), Expect = e-172
Identities = 321/328 (97%), Gaps = 3/328 (0%)
Strand = Plus / Plus
Query: 1 agagaggtggctctgtggttaagggcaccggcttctctctcaaaggacctgggttcaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 agagaggtggctctgtggttaagggcaccggcttctctctcaaaggacatgggttcaatt 263
Query: 61 cccagcaatcacatcacggctcaccaccggcccacacctgtttataactctacttccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccagcaatcacatcacggctcaccaccggcccacacctgtttataactctacttccaga 323
Query: 121 gcatctaatgtctccttctgctctccagggccgccaggcaagcacgtgggacacagacgt 180
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 324 gcatctaatgtctc---ctgctcgccatggccgccaggcaagcacgtgggacacagacgt 380
Query: 181 atatacaggcaaaacacctacacacataagataaaaagaaatagcaaacgacgcgtgctt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atatacaggcaaaacacctacacacataagataaaaagaaatagcaaacgacccgtgctt 440
Query: 241 cctgaagccaagaacgtttgtatctcaggctccatcgaattagctctcctcccgcattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaagccaagaacgtttgtatctcaggctccatcgaattagctctcctcccgcattta 500
Query: 301 tccccaagccctaacaccactcctttga 328
||||||||||||||||||||||||||||
Sbjct: 501 tccccaagccctaacaccactcctttga 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
