MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-462N09
Chromosome	6 (Build37)
Map Location	55,685,447 - 55,685,781
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream gene	Ccdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Znrf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:387524 MGI:1196246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nod1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107607 MGI:1341839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A030007L17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68252 MGI:1915502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353172 MGI:2449057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crhr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12922 MGI:894312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Inmt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21743 MGI:102963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C330043M08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330323 MGI:3583959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aqp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11826 MGI:103201
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ghrhr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14602 MGI:95710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adcyap1r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11517 MGI:108449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Neurod6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11922 MGI:106593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041339 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccdc129 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232016 MGI:2685304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gsbs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19051 MGI:1333876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041357 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Pde1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18575 MGI:108413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG666688 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666688 MGI:3644042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Lsm5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66373 MGI:1913623
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5830411G16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78937 MGI:1926187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 141 ESTs, 3 Proteins

name	Znrf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40255286 GeneID:387524 MGI:1196246
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc and ring finger 2 transcript_id : NM_199143.1

name	Nod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361399 GeneID:107607 MGI:1341839
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleotide-binding oligomerization domain containing 1 transcript_id : NM_172729.2

name	A030007L17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803096 GeneID:68252 MGI:1915502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A030007L17 gene transcript_id : NM_026637.3

name	Gars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:93102416 GeneID:353172 MGI:2449057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycyl-tRNA synthetase transcript_id : NM_180678.3

name	Crhr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801877 GeneID:12922 MGI:894312
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : corticotropin releasing hormone receptor 2 transcript_id : NM_009953.2

name	Inmt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385341 GeneID:21743 MGI:102963
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : indolethylamine N-methyltransferase transcript_id : NM_009349.2

name	C330043M08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382035 GeneID:330323 MGI:3583959
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C330043M08 gene transcript_id : NM_177883.3

name	Aqp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680709 GeneID:11826 MGI:103201
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 1 transcript_id : NM_007472.1

name	Ghrhr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51100961 GeneID:14602 MGI:95710
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth hormone releasing hormone receptor transcript_id : NM_001003685.1

name	Adcyap1r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780367 GeneID:11517 MGI:108449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase activating polypeptide 1 receptor 1 transcript_id : NM_007407.3

name	Adcyap1r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780369 GeneID:11517 MGI:108449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase activating polypeptide 1 receptor 1 transcript_id : NM_001025372.1

name	LOC100042219 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255192 GeneID:100042219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042219 transcript_id : XM_001478152.1

name	Neurod6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753129 GeneID:11922 MGI:106593
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurogenic differentiation 6 transcript_id : NM_009717.1

name	LOC100041339 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255139 GeneID:100041339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100041339 transcript_id : XM_001476194.1

name	Ccdc129 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126158912 GeneID:232016 MGI:2685304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 129 transcript_id : NM_001081665.1

name	Gsbs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129788 GeneID:19051 MGI:1333876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G substrate transcript_id : NM_011153.3

name	Pde1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803532 GeneID:18575 MGI:108413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 1C transcript_id : NM_011054.2

name	Pde1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909351 GeneID:18575 MGI:108413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 1C transcript_id : NM_001025568.1

name	EG666688 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377385 GeneID:666688 MGI:3644042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : predicted gene, EG666688 transcript_id : XM_985410.1

name	Lsm5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476201 GeneID:66373 MGI:1913623
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) transcript_id : NM_025520.2

name	5830411G16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377387 GeneID:78937 MGI:1926187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 141 ESTs, 3 Proteins product : RIKEN cDNA 5830411G16 gene, transcript variant 1 transcript_id : XM_132538.6

name	Znrf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40255287 CCDS:CCDS20159.1 GeneID:387524 MGI:1196246
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger/RING finger 2 protein_id : NP_954594.1

name	Nod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563305 CCDS:CCDS20160.1 GeneID:107607 MGI:1341839
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008656 - caspase activator activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0042834 - peptidoglycan binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006919 - caspase activation [Evidence ISS]; GO:0042742 - defense response to bacterium [Evidence ISS]; GO:0016045 - detection of bacterium [Evidence ISS]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence ISS]; GO:0042228 - interleukin-8 biosynthesis [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence ISS]; GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB cascade [Evidence ISS]; GO:0051259 - protein oligomerization [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 product : caspase recruitment domain 4 protein_id : NP_766317.1

name	A030007L17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311849 CCDS:CCDS20161.1 GeneID:68252 MGI:1915502
definition	codon_start : 1 product : hypothetical protein LOC68252 protein_id : NP_080913.1

name	Gars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:93102417 GeneID:353172 MGI:2449057
definition	GO_component : GO:0030141 - secretory granule [Evidence IDA] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0045055 - regulated secretory pathway [Evidence IDA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA] codon_start : 1 note : storage granule protein 23 product : glycyl-tRNA synthetase protein_id : NP_851009.2

name	Crhr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753522 CCDS:CCDS20162.1 GeneID:12922 MGI:894312
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015056 - corticotrophin-releasing factor receptor activity [Evidence IDA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0005179 - hormone activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IDA]; GO:0016525 - negative regulation of angiogenesis [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : corticotropin-releasing factor 2; CRF 2 receptor product : corticotropin releasing hormone receptor 2 protein_id : NP_034083.1

name	Inmt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678281 CCDS:CCDS20163.1 GeneID:21743 MGI:102963
definition	EC_number : 2.1.1.49 GO_function : GO:0030748 - amine N-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : aromatic alkylamine N-methyltransferase; arylamine N-methyltransferase; amine N-methyltransferase; nicotine N-methyltransferase; thioether S-methyltransferase product : indolethylamine N-methyltransferase protein_id : NP_033375.1

name	C330043M08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244500 GeneID:330323 MGI:3583959
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC330323 protein_id : NP_808551.1

name	Aqp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680710 CCDS:CCDS20164.1 GeneID:11826 MGI:103201
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 function : growth factor-induced delayed early response protein note : growth factor-induced delayed early response protein product : aquaporin 1 protein_id : NP_031498.1

name	Ghrhr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51100962 CCDS:CCDS20165.1 GeneID:14602 MGI:95710
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : growth hormone releasing hormone receptor protein_id : NP_001003685.1

name	Adcyap1r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70780368 CCDS:CCDS20167.1 GeneID:11517 MGI:108449
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : adenylate cyclase activating polypeptide 1 receptor 1 isoform 1 protein_id : NP_031433.3

name	Adcyap1r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70780370 CCDS:CCDS20166.1 GeneID:11517 MGI:108449
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004999 - vasoactive intestinal polypeptide receptor activity [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : adenylate cyclase activating polypeptide 1 receptor 1 isoform 2 protein_id : NP_001020543.1

name	LOC100042219 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255193 GeneID:100042219
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478202.1

name	Neurod6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753130 CCDS:CCDS20168.1 GeneID:11922 MGI:106593
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : atonal homolog 2 product : neurogenic differentiation 6 protein_id : NP_033847.1

name	LOC100041339 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255140 GeneID:100041339
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476244.1

name	Ccdc129 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126158913 GeneID:232016 MGI:2685304
definition	codon_start : 1 product : coiled-coil domain containing 129 protein_id : NP_001075134.1

name	Gsbs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755148 CCDS:CCDS20169.1 GeneID:19051 MGI:1333876
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] GO_function : GO:0004864 - protein phosphatase inhibitor activity [Evidence IDA]; GO:0004865 - type 1 serine/threonine specific protein phosphatase inhibitor activity [Evidence IDA] codon_start : 1 note : G-substrate; protein phosphatase 1, regulatory (inhibitor) 2 product : G substrate protein_id : NP_035283.1

name	Pde1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755008 CCDS:CCDS20170.1 GeneID:18575 MGI:108413
definition	GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 function : high affinity cAMP and cGMP calmodulin-dependent phosphodiesterase note : isoform a is encoded by transcript variant 1 product : phosphodiesterase 1C isoform a protein_id : NP_035184.1

name	Pde1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909352 GeneID:18575 MGI:108413
definition	GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : phosphodiesterase 1C isoform b protein_id : NP_001020739.1

name	EG666688 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377386 GeneID:666688 MGI:3644042
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990504.1

name	Lsm5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384942 GeneID:66373 MGI:1913623
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006402 - mRNA catabolism [Evidence ISS]; GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : LSM5 homolog, U6 small nuclear RNA associated protein_id : NP_079796.1

name	5830411G16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377388 GeneID:78937 MGI:1926187
definition	codon_start : 1 product : hypothetical protein LOC78937 isoform 1 protein_id : XP_132538.5

name	LOC100041357 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041357
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:235452
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:159510
definition	standard_name : AU044205

name	(CDS detail)
type	STS
link
xref	UniSTS:167481
definition	standard_name : RH127066

name	(CDS detail)
type	STS
link
xref	UniSTS:207962
definition	standard_name : RH126672

name	(CDS detail)
type	STS
link
xref	UniSTS:179375
definition	standard_name : AA673177

name	(CDS detail)
type	STS
link
xref	UniSTS:141959
definition	standard_name : D13Sfk7

name	(CDS detail)
type	STS
link
xref	UniSTS:130936
definition	standard_name : D6Mit384

name	(CDS detail)
type	STS
link
xref	UniSTS:235453
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:179376
definition	standard_name : L02914

name	(CDS detail)
type	STS
link
xref	UniSTS:209562
definition	standard_name : Aqp1

name	(CDS detail)
type	STS
link
xref	UniSTS:143206
definition	standard_name : Ghrhr

name	(CDS detail)
type	STS
link
xref	UniSTS:142579
definition	standard_name : D6Jcs25

name	(CDS detail)
type	STS
link
xref	UniSTS:124621
definition	standard_name : 46.MMHAP28FRH10.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:272954
definition	standard_name : PMC315446P1

name	(CDS detail)
type	STS
link
xref	UniSTS:164324
definition	standard_name : AI846590

name	(CDS detail)
type	STS
link
xref	UniSTS:130869
definition	standard_name : D6Mit316

name	(CDS detail)
type	STS
link
xref	UniSTS:125713
definition	standard_name : U29086

name	(CDS detail)
type	STS
link
xref	UniSTS:179377
definition	standard_name : D44480

name	(CDS detail)
type	STS
link
xref	UniSTS:243902
definition	standard_name : BF386980

name	(CDS detail)
type	STS
link
xref	UniSTS:273364
definition	standard_name : PMC57740P1

name	(CDS detail)
type	STS
link
xref	UniSTS:141459
definition	standard_name : D0Nds23

name	(CDS detail)
type	STS
link
xref	UniSTS:130825
definition	standard_name : D6Mit278

name	(CDS detail)
type	STS
link
xref	UniSTS:93396
definition	standard_name : AL033984

name	(CDS detail)
type	STS
link
xref	UniSTS:144147
definition	standard_name : Pde1c

name	(CDS detail)
type	STS
link
xref	UniSTS:163387
definition	standard_name : L76946

name	(CDS detail)
type	STS
link
xref	UniSTS:207963
definition	standard_name : BB433962

name	(CDS detail)
type	STS
link
xref	UniSTS:225098
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:186271
definition	standard_name : 09.MMHAP58FLC3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128932
definition	standard_name : D1Mit73

name	(CDS detail)
type	STS
link
xref	UniSTS:130790
definition	standard_name : D6Mit241

name	(CDS detail)
type	STS
link
xref	UniSTS:224848
definition

clone name	MSMg01-353C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318K23
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-462N09.T7 (MSMg01no462_n09.b1)	MSMg01-462N09.TJ (MSMg01no462_n09.g1)
ACC	AG547629	AG547630
length	1,596	775
length of high quality (start - end)	---	491 (77 - 567)
definition	CHROMAT_FILE: MSMg01no462_n09.b1 PHD_FILE: MSMg01no462_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:58 2005	CHROMAT_FILE: MSMg01no462_n09.g1 PHD_FILE: MSMg01no462_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:58 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATATATAATGTTGCANGATGCACCGTAAGAATAATGACAAATANTTTC TTCCCACAAAAGTAATATCGAGATAATACCAAGCAACTTCTTTCTCCCAC CCTAAGCTCACTTCTACTTTCTCTGTTTTCTATCCCCCCCTGCAAGCCCC TTCAATGAACTATCAACTATCACACAACATATATCATTATCACAACTTCT CTTTAACACCGACAAGGAGAAACATCGCAATGACATATCTCTAGTAGTAT ACGTTTATATGTCATTATCTCCTATATTCTCCACATGCCTCATCTCTAAT ATACACAACACTATACGATACCGTCTATCGTATCGTTAATACTATTCATA TAGTTCCGATCATTATATCGCNACGCTAATCGAGACCGATATACACTTAA TAAATCAATATTAACCTACACAAGACTATTATTACATAGACAGCTCTACT GCGCTGGTTCTCGTAACACATCAAAAGACTACCCACCAAACTCCCACACA CATACATCATCCACTCTTCGTATCTCCTCATATCTTCTCTACACTATACA TGAGAGCGTATACTAGAATCGTATGTACTCATCATTANACATATTATAAA TTTCATCTTCACTATTCATATACCACGTCAACACACTCAAACTNCCTCAC ACGCCTACGAACTCTGCGTACNGTACGACCGAGCAAGCAGCTGCGTTATC CACAACAGATATAGATACGTCAGAGCTCTTTCATATTGACACTCCTCCAT ACTATCACCACGTGTCGACTCTCCGCGTCGGCGTCAGCTAATTTGCTCAC ACATTCACATACCTGTCTATCTACTACTCAGATCNCACAATGAATTCTTG TGCTTTCATCGCTCTACGCATGTCGTCTGCCATATCAAGATACATAATTA CTCCACACACTCTTCACTGCGTCCTTATATACCTCCGACATATATGTATT CATACACTCTNCTTCCTCAGCCGCAACTCCTCGTCAGGGACTCGTCATGT AACTACGATTTCGCACATNTATTTGATTATCACGACAGCGCACGAGTAGC GTCTGCTCTAACTATATCGCGCCACCATAAGGCATCTATTCATCCTATCA TTATACACTCCTAGTATAATTTATATGTTATTCACTATACATATGGCGAC ACATCAGCTTACTACTAATACATCTACTACGCACATATACTACATCGCGT TTGACACGCACGACCATTGNTCACGATGAGTCAGTAGTAATCAANCTTTG ACATACGCTATGTGACCTGATATACACATACATATATCTGCGCTTATCNT TAACGACTATGTAGCTGCACATATCCTATATCTACACACGCACGTCTGAC TGCTTGCATGCAATAACATCAGTCCATCCACATATGATCACAGTCCTACA TANTATATCACCCNCAATACTATTAGCGTATCGAACGAAANTATANACAG CATATTTCACTTCTAATATCTGAGTACGAATAGTNCACTACTCACACTCG ACCTACAGTCTATGCATATGACAGATAAACTCCACCGACAACCAACTAAC CATATGCATACTAAGATAGTATACACCAATANTATCNTGTNCTACN	NCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCATGTGTGTGTCTTACGCT GGGTCAGTTCTGGTCCCATGTCTGAGTGTGTAGCATCTTCCACATTTTTG TGAAATTTCCTGGGTCTTTGTACCTGAAAGGCATTTCTTTTTCTTGTTTG AGTAGATAGTTATGGTTTGCAAGGGTAAGCAACCCTATCTTTAAAATGCT CTTGAGGTTAAGGAGATTCGGACACTCTTATGGCTTATGGTTCAAATGTC AACTTGATACAAATTAGAACCTCTGGAGTAGGAAGCCTCACCAGAGGAGG TTCCTGATTGGTTGATGTGGAATAGACCTTGACTGTGGGCATCACTTTCT GGTAGCAGCACTAGCTACTGGATATGAAATAAATAAAATGAAAATAAAAG GGGCTTGGCAGAAGAGAGATCGTCTTGTCTCTTGCTAATTAGACTGTCTA TCTTGCCACTGAGATAATTTACACTTTGTTCGTACCCATTCCTTTACTGA AATCAGAATCTGCATTTATGGCCTTTAATCATGGACAAGGGACCCATGTC TCTCCAAGAATCTTCTTAGCTTCTGGTAACAAACTGGGACTATTGGCTCA ATATACCTTTGGACTGAGCAACTTCCAAGTAAGAACTTTATAAAGGTCCC CTCTTGTGGGAAAAACTTTGATGGCCGAAACACCCACTCTTAAGGACCCG GGTTTCCCCAACGGTTTTTTTTTCN
quality values	Open. Hide. 8 8 8 8 8 8 8 9 6 6 6 6 6 8 8 8 3 0 3 8 8 8 8 8 8 10 11 11 11 11 9 9 8 8 8 8 8 11 11 13 9 9 9 10 3 0 3 8 8 6 6 8 10 9 8 8 10 9 7 10 6 6 6 8 8 8 11 11 11 10 9 9 9 9 9 8 8 8 8 10 8 8 10 9 10 10 10 8 8 8 8 15 10 13 13 11 16 10 10 10 13 12 11 8 7 7 6 6 6 6 6 6 8 8 8 8 8 11 11 9 6 8 8 8 8 8 8 8 11 11 13 10 10 10 10 10 13 15 21 12 11 10 8 8 8 8 8 8 12 13 11 11 11 11 10 10 10 8 10 10 10 6 6 6 6 8 10 8 6 8 8 8 10 7 7 6 8 8 8 12 12 10 10 9 9 10 8 10 10 8 8 8 8 11 12 10 8 8 8 10 13 13 8 6 6 8 8 8 7 9 9 8 8 8 8 6 6 8 8 8 9 10 8 6 6 6 8 8 12 10 10 8 8 11 8 8 8 12 16 13 10 10 6 6 6 6 6 6 8 11 12 6 6 8 6 8 8 8 8 8 11 10 11 11 8 8 6 6 8 11 10 10 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 8 10 10 12 9 9 12 10 10 10 10 8 8 8 6 6 8 9 9 10 8 8 8 8 8 8 8 8 6 6 6 7 8 8 8 8 8 6 8 9 9 7 7 7 6 6 7 6 8 8 6 6 8 8 8 8 8 6 7 9 9 10 6 6 8 6 6 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 3 0 3 8 8 8 8 10 8 8 8 10 8 7 7 7 8 10 8 8 8 8 6 6 6 6 8 8 8 8 10 8 8 6 6 8 8 6 8 8 8 8 9 9 6 8 8 8 8 8 8 8 10 9 6 6 6 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 9 8 8 6 6 6 8 8 8 8 10 10 10 10 10 8 8 8 8 8 8 8 8 7 7 7 6 8 9 10 8 11 10 8 9 8 8 8 8 8 8 8 6 6 6 6 6 6 8 10 10 10 10 10 8 6 6 6 6 10 6 8 8 8 8 9 8 10 6 8 8 8 12 12 13 8 10 8 8 6 6 6 6 6 6 8 8 8 8 8 10 8 10 10 10 10 8 8 8 10 8 8 8 6 6 6 6 6 6 8 8 8 6 6 6 6 6 6 8 8 8 8 6 6 8 6 8 10 10 10 10 10 10 11 10 9 13 13 8 3 0 3 6 8 8 8 10 10 9 9 8 8 8 8 8 6 6 6 6 8 6 9 8 8 10 8 8 8 8 6 6 8 8 8 6 6 8 10 8 8 8 10 10 9 9 8 8 6 6 6 6 6 8 8 8 3 0 3 9 10 8 9 9 9 9 10 10 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3 0 3 6 6 6 6 6 6 6 6 6 8 8 13 10 10 10 13 13 10 10 10 12 9 9 9 10 8 8 8 11 11 8 10 9 8 8 8 8 8 8 8 10 10 13 12 12 12 8 8 6 6 8 8 12 12 15 12 12 8 8 10 8 8 8 8 9 9 9 11 9 9 11 12 8 8 7 7 10 10 10 8 11 8 8 10 10 10 10 9 9 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 6 8 6 7 8 8 8 8 8 9 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 10 8 8 8 6 8 6 6 6 6 7 13 15 12 9 9 10 8 8 3 0 3 8 8 8 8 8 8 8 8 8 8 10 10 9 9 9 9 9 10 13 13 9 9 9 9 9 6 6 8 8 8 6 9 6 8 6 6 6 6 11 11 8 8 8 8 8 8 15 8 8 8 8 7 8 8 15 13 8 13 8 10 8 8 8 8 8 8 8 8 8 6 6 7 6 8 10 10 8 9 9 8 10 8 6 6 6 6 8 10 11 8 10 8 8 10 10 10 8 10 8 8 10 8 8 8 8 8 8 8 10 10 8 8 8 8 8 6 6 6 8 8 10 14 13 3 0 3 9 9 9 9 8 8 6 6 10 6 9 9 10 10 9 8 8 7 6 8 6 6 8 10 6 6 6 6 8 8 6 6 8 6 6 6 6 6 8 8 10 9 10 6 6 6 7 8 8 11 11 8 8 8 8 3 0 3 8 8 8 10 10 6 6 8 8 8 6 6 8 6 6 6 8 6 6 6 6 8 6 8 8 8 8 10 12 6 6 6 6 8 6 6 6 6 6 11 6 9 10 11 13 10 10 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 6 6 8 8 8 8 10 8 8 10 9 8 8 6 6 6 8 23 19 19 19 10 10 9 9 9 8 8 8 8 10 8 8 8 8 8 10 11 14 9 6 6 6 6 6 8 8 8 9 10 12 10 10 6 6 6 6 6 6 6 6 6 6 6 7 6 6 6 6 6 8 8 8 9 8 8 8 7 7 6 7 6 6 8 7 8 8 8 8 10 10 9 9 8 6 6 6 6 6 8 6 8 6 7 8 12 10 8 8 9 12 9 9 9 10 8 8 8 8 8 8 9 9 9 9 10 7 7 8 8 8 8 3 0 3 8 8 6 6 6 6 6 6 10 8 6 6 6 6 6 6 8 9 8 8 7 8 3 0 3 6 6 6 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 8 6 6 6 6 6 6 6 6 6 6 6 8 7 8 8 8 8 8 8 8 8 8 8 6 6 6 8 6 6 8 3 0 3 8 6 6 6 6 6 6 8 8 8 8 8 8 9 11 11 10 7 8 6 6 8 6 6 6 6 6 6 6 6 6 6 7 6 6 6 6 6 6 6 6 8 6 6 6 6 7 7 8 10 6 6 6 6 7 7 6 6 6 8 6 6 8 6 6 6 6 8 8 8 6 6 6 6 6 6 6 6 6 8 9 9 9 10 9 9 6 10 6 6 6 6 6 6 6 10 9 6 10 6 6 3 0 3 9 9 9 9 7 7 7 6 3 0 3 10 8 8 7 7 8 8 7 6 6 6 8 6 9 9 6 6 6 6 7 6 6 6 6 3 0 3 8 8 3 0 3 9 6 6 6 6 10 6 8 8 8 8 6 6 6 6 6 8 8 11 13 18 10 10 7 6 6 6 6 8 8 8 8 8 6 8 6 3 0 3 8 9 8 8 8 8 10 8 10 12 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 11 9 9 9 11 8 8 8 6 6 6 9 9 8 8 6 6 6 6 8 6 6 6 6 6 8 8 6 6 6 6 6 6 6 6 10 7 9 8 8 10 9 9 9 6 6 6 6 6 6 8 8 8 9 9 9 9 6 6 6 6 10 13 9 9 9 9 9 11 3 0 3 7 8 3 0 3 11 3 0 3 7 7 3 0	Open. Hide. 0 3 10 12 9 10 10 9 9 18 9 11 11 16 22 25 31 31 31 39 39 30 30 37 37 37 37 37 32 25 25 18 9 9 9 6 6 6 6 6 6 13 15 15 26 21 30 37 37 33 36 36 36 36 33 50 50 50 42 25 25 10 9 10 10 10 10 14 15 21 15 18 24 28 31 31 41 47 47 47 50 50 50 50 53 59 59 59 59 59 59 57 57 59 59 59 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 50 46 46 48 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 68 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 59 59 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 62 68 68 62 62 62 62 68 68 62 44 44 21 21 21 21 11 11 11 15 12 13 15 24 33 43 62 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 59 59 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 59 57 57 57 57 57 68 68 68 68 57 57 57 57 52 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 68 59 59 59 59 52 57 57 57 59 57 57 57 57 57 57 59 57 57 48 57 57 57 57 57 57 57 57 57 57 57 57 68 57 68 68 57 57 57 57 57 57 57 57 57 57 48 57 59 59 59 57 57 54 57 57 57 57 57 57 59 59 48 48 47 47 40 47 39 39 39 43 59 48 48 48 48 48 48 57 57 59 57 47 47 47 47 47 39 43 28 28 23 34 34 39 39 39 47 47 47 47 59 59 37 31 31 37 37 31 34 28 24 19 31 31 32 26 27 30 30 28 36 39 39 39 43 36 36 32 37 39 43 43 47 47 48 48 48 43 43 48 40 40 41 39 37 37 37 29 29 30 21 21 15 21 19 22 23 28 24 25 25 25 21 31 22 23 18 19 15 24 24 21 21 21 17 14 19 15 20 21 17 14 15 14 11 11 13 29 23 24 17 18 18 15 15 12 12 12 15 15 15 18 14 18 18 18 13 13 15 20 22 14 13 6 6 6 8 8 14 13 18 19 17 15 17 14 14 14 13 9 8 8 8 8 10 10 10 11 11 11 20 13 11 11 11 11 10 10 7 10 7 7 6 7 9 9 10 11 8 8 8 8 8 8 10 9 10 7 6 6 6 6 7 8 8 8 8 9 10 11 10 10 13 17 10 10 8 8 8 8 8 9 9 8 8 9 9 9 11 11 11 11 11 11 11 9 11 14 11 10 10 9 9 9 8 8 11 8 8 8 9 10 10 10 10 8 8 8 8 8 10 11 10 10 8 8 8 8 8 8 9 8 12 12 12 14 13 14 10 12 8 8 10 10 10 13 11 11 10 10 10 10 10 13 14 18 11 11 9 15 12 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no462_n09.g1 MSMg01no462_n09.g1 CHROMAT_FILE:
MSMg01no462_n09.g1 PHD_FILE: MSMg01no462_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:58 2005
         (491 letters)



>mm_chr6_55685091_55685981
          Length = 891

 Score =  586 bits (303), Expect = e-171
 Identities = 327/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 157 ccctatctttaaaatgctcttgaggttaaggagattcggacactcttatggcttatggtt 216
           ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||
Sbjct: 357 ccctatctttaaaatgctcttgaggttaaagagattcggacactcttatttcttatggtt 416

                                                                       
Query: 217 caaatgtcaacttgatacaaattagaacctctggagtaggaagcctcaccagaggaggtt 276
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 417 caaatgtcaacttgatacaaattagaaccactggagtaggaagcctcaccagaggaggtt 476

                                                                       
Query: 277 cctgattggttgatgtggaatagaccttgactgtgggcatcactttctggtagcagcact 336
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 477 cctgattggttgatgtggaatagaccttgactgtgggcatcgctttctggtagcagcact 536

                                                                       
Query: 337 agctactggatatgaaataaataaaatgaaaataaaaggggcttggcagaagagagatcg 396
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 537 agctactgaatatgaaataaataaaatgaaaataaaaggggcttggcagaagagagatca 596

                                                                       
Query: 397 tcttgtctcttgctaattagactgtctatcttgccactgagataatttacactttgttcg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 597 tcttgtctcttgctaattagactgtctatcttgccactgagataatttacactttgttct 656

                                              
Query: 457 tacccattcctttactgaaatcagaatctgcattt 491
           |||||||||||||||||||||||||||||||||||
Sbjct: 657 tacccattcctttactgaaatcagaatctgcattt 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information