Query= MSMg01no462_p12.b1 MSMg01no462_p12.b1 CHROMAT_FILE:
MSMg01no462_p12.b1 PHD_FILE: MSMg01no462_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:10 2005
(160 letters)
>mm_chr6_6767860_6768423
Length = 564
Score = 224 bits (116), Expect = 2e-63
Identities = 139/148 (93%), Gaps = 4/148 (2%)
Strand = Plus / Minus
Query: 1 tctgggcgagtttgtttgatgacagttctgcagtattcattcacaggcagacacgcaggg 60
||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 348 tctgggcgagtctgtttgatgacaattctgcagtattcattcacaggcagacacacaggg 289
Query: 61 gcccagaatgaactgggc---ct-ctaggtcaatgaccttccccttcaccactgagtctg 116
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 288 gcccagaatgaactgggcacgcttctaggtcaatgaccttccccttcaccactgagtctg 229
Query: 117 gcgagtcacatgtggagtgtagctatgt 144
| |||||| |||||||||||||||||||
Sbjct: 228 gtgagtcagatgtggagtgtagctatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 564
Length adjustment: 8
Effective length of query: 152
Effective length of database: 556
Effective search space: 84512
Effective search space used: 84512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no462_p12.g1 MSMg01no462_p12.g1 CHROMAT_FILE:
MSMg01no462_p12.g1 PHD_FILE: MSMg01no462_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:10 2005
(594 letters)
>mm_chr6_6552777_6553770
Length = 994
Score = 1094 bits (566), Expect = 0.0
Identities = 587/594 (98%)
Strand = Plus / Plus
Query: 1 cttcccctcccctcccttctggagagaggagaaactacttaactcctttacatgccaaac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcccttcccctcccttctggagagaggagaaactacttaactcctttacatgccaaag 260
Query: 61 ctttgtatttttaaaaatattttcaataaaggccccctcattcagtggtcattgtggaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ctttgtatttttaaaaatattttcaataaaggccccctcattcagtggccattgtggaaa 320
Query: 121 catacaaagatacatctgcacacacacaacgcttggtagtatatgcagcatatagttacc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacaaagatacatctgcacacacacaacgcttggtagtatatgcagcatatagttacc 380
Query: 181 tctaaatgggaggtattccagaatggattgtcattatcaaacatcaagatgactgcaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaaatgggaggtattccagaatggattgtcattatcaaacatcaagatgactgcaatg 440
Query: 241 ttttaaaggtaatgcaattcactagattctatcattggggtctttagtagcctttgaggg 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattaaaggtaatgcaatttactagattctatcattggggtctttagtagcctttgaggg 500
Query: 301 agttagtacagtgatcacaagtctacatatgtgtgtggagaaggagaaaaaatgcccatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttagtacagtgatcacaagtctacatatgtgtgtggagaaggagaaaaaatgcccatt 560
Query: 361 tggcaaaacacacaacagtaaaccaagcagacagttcaagtctgaaagtgagagtgcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcaaaacacacaacagtaaaccaagcagacagttcaagtctgaaagtgagagtgcatt 620
Query: 421 cagataaaaatacagaagaataaaccaggaaagtatagctgcggtaacccaacctgaggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagataaaaatacagaagaataaaccaggaaagtatagctgcggtaacccaacctgaggc 680
Query: 481 atggttgctatgtccagaaagaggagatacgggtagaagtcactgtaaggaagaaagata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggttgctatgtccagaaagaggagatacgggtagaagtcactgtaaggaagaaagata 740
Query: 541 agtctatggatcatttctgccaaatgctcacagagctttggagtctggtgttgt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtctatggatcatttctgccaaatgctcacagagctttggagtctggtgttgt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
