Query= MSMg01no463_a20.b1 MSMg01no463_a20.b1 CHROMAT_FILE:
MSMg01no463_a20.b1 PHD_FILE: MSMg01no463_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:17 2005
(618 letters)
>mm_chr6_11354860_11355877
Length = 1018
Score = 1180 bits (610), Expect = 0.0
Identities = 616/618 (99%)
Strand = Plus / Plus
Query: 1 aaaactatgtctcttgttctggtcactgagtccatatttatgcaattccataagtccaga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aaaactatgtctcttgttctggtcactgagttcatatttatgcaattccataagtccaga 260
Query: 61 tatcataaattcttcatttaatcaccctcatataggctatattaaaaattctgctaaaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tatcataaattcttcatttaatcaccctcatataggctatattaaatattctgctaaaga 320
Query: 121 actttcattccagcctgaaggcatttgaaaaagcaggtttaatttgtaatttgttattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttcattccagcctgaaggcatttgaaaaagcaggtttaatttgtaatttgttattaa 380
Query: 181 aatgaaatttcgctactttatgcatgttaaacacatgaaattaatccaactcaacattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaaatttcgctactttatgcatgttaaacacatgaaattaatccaactcaacattac 440
Query: 241 ctgatagacaccttactaacaagtatatgtgtatgcatatgtgtgtgcatattaacatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgatagacaccttactaacaagtatatgtgtatgcatatgtgtgtgcatattaacatta 500
Query: 301 tattcatttgttcatcaaacgttgtggtcactgtagaaggtaattaagaaaagaaggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcatttgttcatcaaacgttgtggtcactgtagaaggtaattaagaaaagaaggttt 560
Query: 361 agttatttatggtctattgtctaaaatatggaatatatgtgtgcttgtgtgtatgtgatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttatttatggtctattgtctaaaatatggaatatatgtgtgcttgtgtgtatgtgatg 620
Query: 421 ctttccaagtatttgctatacatttgaaattattatttaatccatgtatgttcaattact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttccaagtatttgctatacatttgaaattattatttaatccatgtatgttcaattact 680
Query: 481 aacacccagagaatttgcatttatcttggaataagtagataagagtcataaaaccttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacacccagagaatttgcatttatcttggaataagtagataagagtcataaaaccttcaa 740
Query: 541 gttgcttacattctgctaagaaacagttgaataatttgattaatgatagcatcagtaatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttgcttacattctgctaagaaacagttgaataatttgattaatgatagcatcagtaatc 800
Query: 601 cttaagcatagtactagt 618
||||||||||||||||||
Sbjct: 801 cttaagcatagtactagt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_a20.g1 MSMg01no463_a20.g1 CHROMAT_FILE:
MSMg01no463_a20.g1 PHD_FILE: MSMg01no463_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:17 2005
(461 letters)
>mm_chr6_11529671_11530531
Length = 861
Score = 793 bits (410), Expect = 0.0
Identities = 441/456 (96%), Gaps = 8/456 (1%)
Strand = Plus / Minus
Query: 1 tcacctttacctcaatggaatatggacatggtcggcagggtcctaggaacacttagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcacctttacctcaatggaatatggacatggtcggcagggtcctaggaacacttagaaag 389
Query: 61 aaggaggaagacaagggtcctctttgtaaaagataacagacatctgaaggaacttgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggaggaagacaagggtcctctttgtaaaagataacagacatctgaaggaacttgaggt 329
Query: 121 taaggaagagggtgagtgtctagctttttatatcctgttgttttataaaattgcattact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taaggaagagggtgagtgtctagctttttatatcctgttgttttataaaattgcattact 269
Query: 181 tcaactcccatgacctcaaaataaaatccaagtgttttcctagggggaaagatataggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcaactcccatgacctcaaaataaaatccaagtgttttcctagggggaaagatataggcc 209
Query: 241 ataaaaaccggaaagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ataaaaacgggaaagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 149
Query: 301 agaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga 360
|||||||||||||| | ||| ||||||||||||||||||||| ||| ||| ||
Sbjct: 148 agaaagaaagaaag--------gcaggcaggaaggaaggaaggaaggaatgaatgaatga 97
Query: 361 atataggaagaggaactgcagcctattgttataagctaagataaaggaaagaagtgtaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atataggaagaggaactgcagcctattgttataagctaagataaaggaaagaagtgtaat 37
Query: 421 tctttatttttataagagcaggaatcacctggcagt 456
|||||||||||||||||||||| |||||||||||||
Sbjct: 36 tctttatttttataagagcaggcatcacctggcagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
