BAC Information

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BAC

Clone NameMSMg01-463C03
Chromosome6 (Build37)
Map Location 119,075,034 - 119,148,836
singlet/doubletdoublet
Overlap geneCacna1c, Dcp1b
Upstream geneGalnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneCacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C03.T7 (MSMg01no463_c03.b1)MSMg01-463C03.TJ (MSMg01no463_c03.g1)
ACCAG547856AG547857
length840746
length of high quality
(start - end)		224 (83 - 306)523 (83 - 605)
definitionCHROMAT_FILE: MSMg01no463_c03.b1 PHD_FILE: MSMg01no463_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:24 2005CHROMAT_FILE: MSMg01no463_c03.g1 PHD_FILE: MSMg01no463_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,075,034 - 119,075,255)(119,148,314 - 119,148,836)
sequence
NTTTGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGGCCATTACACCAAACCCAGGGAAGGTAGTAGAAGC
ATAGTTTCATCAGGAGACGAGAATAATTAGAACAAAGCTGTCACAGAGAT
AAATAAACAATACTGGGATAACTAATGCCACAAAATCAATAAAGTGACAG
GAATCAATATTCATCTTTCAGTAATAACTCTGAATAGTAATGGTCCCTTC
AAGGATGAGGGAGGGTTGAGTGGAAAGGGGTTGGAGGAAGAGCTAGGAGA
AAGGGTTGTTANTACNAAAGATTTTTTTTTTTTTTANAAGGAACAAACNA
GACCAGGGGCCGACACTCCTACACCCCCCCCCACCGTAGCTTTTTATATA
ACTTTTTCTCAACTATTAATTACTTCTTTTCGCCTCGTCCGATCATATTC
TACACCATTTTATACCTTTCCATTACTATTCTCTTCTCCTCCTCGTCAAC
TACTTTTATACATTCATTCTTTTTTTCGGATCTTTACCAAACTTCTTTAT
CCCCTCTTTTTAAGTATATGCTCTTTTTAAATCACGTTTCTTTTATTGCA
CTCCCTACTCTTGTATTTTTCCTCGGTGCACTCCTCTTTTACTATTTATT
CGTTTCTTTCCCCCTTACTTCGATTTAATCACCATCAAACACAACCCTTT
TTCTCTACTCCTTCCAACTGTGATTCTACTTATCTTTTCATCTTTATTTC
TCTTTTCCCCCCTCTTTTACTTTTTTCCCCATTATACCCCATTTTTCTTT
CACCTCTTTTTATACCACCTTTGAGTCTCCTCCCCATCAT

NNNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGTGATTATTAAA
TAGATGAAAGCAGTCATTGGAGTCAGAGCCAGGGCTACATGAGACCCCGT
GCCAAAAGGAAAAGCATGTGCTGTTAGAAGCGCTGCTGAGCGGCCTACAC
CCTGAAGCCTGCTTCCCTGCCTCTACCCAACAGGCAGTTGGTGAGCGCTT
CGTAACCAAGCGGCTACAGATTGAAAACGAGATCAGGATGCTAAACTTCT
TGGCTTTGAGACGTCATTGTTTCTATGTTCCATTTGCACATCTCACAAGC
ACATTTAATCTTTATTCTTAAATATTCAGAACCTGATGCTCATCTCATGC
CTGGAACCCTCCTTCCCTCTCCTTCTCCAAGGAACACGGTAACTGAAAAA
CTGGCTATGAGTTATTAGGATAGGAAACTAGAAAAATATAATTTTAATAA
TCAATTTCACTTTAAAATGTCTGTACAGAAAATTTACAAATGTTGGAAGG
TTAGGTATGACGATGGTGTAACCATTTAGCAAGGAACGGAAAANATACCG
TTGTGGTTGATTTTAACCATTTTCCAAGTAAGCTGTCTATTANATTTAGT
GCGTACCCCGCTCTATCAGATCTATAGTACGGGTTAAGACAGTTGCAGGA
TACATTTGTGAATATCCTAGTTAGGGCCCGGCCCCTTAGGCTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c03.b1 MSMg01no463_c03.b1 CHROMAT_FILE:
MSMg01no463_c03.b1 PHD_FILE: MSMg01no463_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:24 2005
         (224 letters)



>mm_chr6_119074832_119075455
          Length = 624

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaaggtagtagaagcatagtttcatcaggagacgagaataattagaacaaagctgtcac 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 ggaaggtagtagaagcatagtttcatcaggagacgaggataattagaacaaagctgtcac 262

                                                                       
Query: 63  agagataaataaacaatactgggataactaatgccacaaaatcaataaagtgacaggaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 agagataaataaacaatactgggataactaatgccacaaaatcaataaaatgacaggaat 322

                                                                       
Query: 123 caatattcatctttcagtaataactctgaatagtaatggtcccttcaaggatgagggagg 182
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 caatattcatctttcagtaataactctgaatagtaatggtcccctcaaggatgagggagg 382

                                                     
Query: 183 gttgagtggaaaggggttggaggaagagctaggagaaagggt 224
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttgagtggaaaggggttggaggaagagctaggagaaagggt 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no463_c03.g1 MSMg01no463_c03.g1 CHROMAT_FILE:
MSMg01no463_c03.g1 PHD_FILE: MSMg01no463_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:24 2005
         (523 letters)



>mm_chr6_119148114_119149036
          Length = 923

 Score =  959 bits (496), Expect = 0.0
 Identities = 516/523 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcgagtgattattaaatagatgaaagcagtcattggagtcagagccagggctacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 attcgagtgattattaaatagatgaaagcagtcattggagtcagagccagggctacatga 664

                                                                       
Query: 61  gaccccgtgccaaaaggaaaagcatgtgctgttagaagcgctgctgagcggcctacaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaccccgtgccaaaaggaaaagcatgtgctgttagaagcgctgctgagcggcctacaccc 604

                                                                       
Query: 121 tgaagcctgcttccctgcctctacccaacaggcagttggtgagcgcttcgtaaccaagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 603 tgaagcctgcttccctgcctctacccaacaggcagttggtgagcgcttcataaccaagcg 544

                                                                       
Query: 181 gctacagattgaaaacgagatcaggatgctaaacttcttggctttgagacgtcattgttt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gctacagattgaaaatgagatcaggatgctaaacttcttggctttgagacgtcattgttt 484

                                                                       
Query: 241 ctatgttccatttgcacatctcacaagcacatttaatctttattcttaaatattcagaac 300
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 483 ctatgttccatttgcacatctcacaaacacatttcatctttattcttaaatattcagaac 424

                                                                       
Query: 301 ctgatgctcatctcatgcctggaaccctccttccctctccttctccaaggaacacggtaa 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 423 ctgatgctcatctcatgcctggaaccctccttccctctccctctccaaggaacacggtaa 364

                                                                       
Query: 361 ctgaaaaactggctatgagttattaggataggaaactagaaaaatataattttaataatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgaaaaactggctatgagttattaggataggaaactagaaaaatataattttaataatc 304

                                                                       
Query: 421 aatttcactttaaaatgtctgtacagaaaatttacaaatgttggaaggttaggtatgacg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303 aatttcactttaaaatgtctgtacagaaaatttacaaatgttggaaggttaggtgtgacg 244

                                                      
Query: 481 atggtgtaaccatttagcaaggaacggaaaanataccgttgtg 523
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 243 atggtgtaaccatttagcaaggaacggaaaaaataccgttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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