BAC Information

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BAC

Clone NameMSMg01-463O05
Chromosome6 (Build37)
Map Location 101,145,746 - 101,145,939
singlet/doubletsinglet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O05.T7 (MSMg01no463_o05.b1)MSMg01-463O05.TJ (MSMg01no463_o05.g1)
ACCAG548434AG548435
length846782
length of high quality
(start - end)
---196 (128 - 323)
definitionCHROMAT_FILE: MSMg01no463_o05.b1 PHD_FILE: MSMg01no463_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:28 2005CHROMAT_FILE: MSMg01no463_o05.g1 PHD_FILE: MSMg01no463_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCCACATTTGAGGGCGTTATACGATTCAGTGATGCTACACAACCGCG
GAATTCCAAGGTTGTCACGCAAACTGTAATCCCAGTACTCAGAGGCAGAA
GCAGGTAGATCTCTGAGTTTGACGCCAGCCTGGTCTACAGAGTGAGTTTT
AGCAGAACCAGAGCTAAGCAGCCAGGCTTACACATTATCAGGTCTGAAAG
TTGAAAGGAGTATAAGTGGCGACTTTTCCCAAGGCATTCCTATGAGATGC
TTGTTTGGACAGTGTATTAGCCTAGCCCAAGGCCTCTGACATCATGACTA
TCATTCCACGAGCCTCTTTTTTTTTTTGTCGACCCATGCCCATCTTTTAC
TTTATCATTTCTCTTGTACCCCCACTATTCATTATTTGATTATGACTATC
CTGCTCTCTTAACCTCCTGATACCCCTTCCTCTTCTATGATGGGATCCTT
CTCCTTCTTTTAGCTTCTTCTTCTCCGTTGTTCTTTCTCGACCTTCACCA
TCTTTACGATTTTATTTCCGCCGAGCCCGCGCACTTTTCTTCTTATCTTT
TTTATTCATCCTTATTTTTTTTTTTTTTTTTACTCACATTCTTGCGTTTT
TTATTTTTCCTCTACGCTCTCCTTTCTTTCCTTTCCTACTCTTTTCCATT
TGCGTTTTCTTTCTTATTGTAATTGTAGTCTCCCCTTTTCTGTTTTCCTC
TTACCCCCCCGATTTCTATTTTTTTTTTACACCATAAACTTTCCCTAATA
CTCAATTTATTCATATGCTCCACAATTTTTCAACCTACTCTTTATTTTCT
CACTATGTTATTCTTCTTTACGCCTTATTCTTCTTCCATACTCTTN
TTCGATGATAGTGTGTAGGCCTGGNGGNCGCCTGGTTCCAAACATTGAGG
TGAACTATAGAATGTTTCGCAAAAATTCATGGGAAACCAGACGACCGGCA
TTTAGCATATTGCCAGTACATCACCACGCATGCTGTAGGTAATGTTGCAG
ATGTGTGGAAGTGTGTTTTCCTGGCGTGCAAACTTCAGGTAAGTGAGTTA
GTTAAAGTTTCCAGTGGGAAACAGAATTCCCTATCAGTTCCCTGTTGACT
CCTGACTCTTCAGAGTTCTTTTGGTTGGATGCCACCTCTGATCTTTTTAT
TCCTTTCTCTAACTCTCCACTTTATTATTACAAAATACCCAGACAGCCAT
TCCACCTTTCCTGTTATCCCACCTGACATCCAGCCTGCCCTGGAATCACA
GTGTCCAGCTAACAGAGTCACCCTGAATGAGTATTTTCCTTCCTTTCCAC
CCAGAACTTGTCACCCGTCCTCATCTGTCTTGCAGGCCTGGAGCCACGAG
TCTAAAAATTGAGCTTCTCTGTGTCATCCATTTTCCCTATGTAGAACATT
GTTATTTCCTTTGACGCCCTCCTGAGAATCTTTCCTTTTTGCGTCATCTT
TTTTTTCTTTTTCCTTGAATTAAGGTTATTTTTATGTTACTTTGATCTTT
TTCACCCTGGATAATCTTATTTTTTTCTCTAATACCCATGAATTGCACCT
TATTCCAAGAATCTATGGGTTTCACCCCTTGAAATTTCATGTTACTTTTA
TTAATATGCTCTCAACAAATCATTGGTATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o05.g1 MSMg01no463_o05.g1 CHROMAT_FILE:
MSMg01no463_o05.g1 PHD_FILE: MSMg01no463_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:28 2005
         (196 letters)



>mm_chr6_101145546_101146142
          Length = 597

 Score =  337 bits (174), Expect = 4e-97
 Identities = 189/194 (97%), Gaps = 1/194 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgctgtaggtaatgttgcagatgtgtggaagtgtgttttcctggcgtgcaaacttca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gcatgctgtaggtaatgttgcagatgtgtggaagtgtgtttttctggcgtgcaaacttca 260

                                                                       
Query: 61  ggtaagtgagttagttaaagtttccagtgggaaacagaattccctatcagttccctgttg 120
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaagtgagttagttagagttttcagtgggaaacagaattccctatcagttccctgttg 320

                                                                       
Query: 121 actcctgactcttcagagttcttttggttggatgccacctctgatcttttt-attccttt 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 actcctgactcctcagagttcttttggttggatgccacctctgatcttttttattccttt 380

                         
Query: 180 ctctaactctccac 193
           ||||||||||||||
Sbjct: 381 ctctaactctccac 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 597
Length adjustment: 8
Effective length of query: 188
Effective length of database: 589
Effective search space:   110732
Effective search space used:   110732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)