Query= MSMg01no464_a10.b1 MSMg01no464_a10.b1 CHROMAT_FILE:
MSMg01no464_a10.b1 PHD_FILE: MSMg01no464_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:39 2005
(238 letters)
>mm_chr6_5578693_5579329
Length = 637
Score = 263 bits (136), Expect = 6e-75
Identities = 225/282 (79%), Gaps = 47/282 (16%)
Strand = Plus / Minus
Query: 1 ctgaa-accaaaacagagcagagagagcctccacggtgggaaagcatttccaatgtgtac 59
||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct: 352 ctgaataccaaa--agagcagagagagcctccatgatgggaaagcatttccaatgtgtgc 295
Query: 60 att-gaacaaggatgtatcaaggatatgcagagtatgcaaggaactgtcaaaattcaatg 118
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attggaa-aaggatgtatcaaggatatgcagagtatgcaaggaactgtcaaaattcaatg 236
Query: 119 gcagcagacaattaaccag-t--------------------------------------- 138
|||||||||| |||||||| |
Sbjct: 235 gcagcagacagttaaccagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
Query: 139 --tgtgtgtgtatgtgtttgtcagtatgcatgtttgcttgtagatacaggcttgccatga 196
||||||||| |||||||| | || ||||||||||| || |||||||||||||||||||
Sbjct: 175 tgtgtgtgtgtgtgtgtttgccggtgtgcatgtttgcatgcagatacaggcttgccatga 116
Query: 197 tacatgaggaagtcagaggaaacttgggtatcagcccttgtc 238
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tacatgaggaagtcagaggaaacttgggtatcagcccttgtc 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 637
Length adjustment: 9
Effective length of query: 229
Effective length of database: 628
Effective search space: 143812
Effective search space used: 143812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_a10.g1 MSMg01no464_a10.g1 CHROMAT_FILE:
MSMg01no464_a10.g1 PHD_FILE: MSMg01no464_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:39 2005
(475 letters)
>mm_chr6_5404571_5405445
Length = 875
Score = 683 bits (353), Expect = 0.0
Identities = 430/475 (90%), Gaps = 32/475 (6%)
Strand = Plus / Plus
Query: 1 aactgctacacacaatttcaaaactgccttctcctcgctgtgggtcctggcttctgtcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aactgctacacacaatttcaaaactgccttctcctcgctctgggtcctggcttctgtcct 260
Query: 61 gggctcgtacagcagagtgtgtctctgatgtttccttcatcaaagtgccagtcacaacat 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctcatacagcagagtgtgtctctgatgtttccttcatcaaagtgccagtcacaacat 320
Query: 121 ggtaaatcctgtgtcttatgtgagaacaccaaaaggcatattgtaaaaactactctgcca 180
|| ||||||||||||||||||||||||||| ||||
Sbjct: 321 ggaaaatcctgtgtcttatgtgagaacacc-----------------aact--------- 354
Query: 181 cctactctgctgcctaaagcaacctataccttcaaagaaacggtagtcaaaactttaatg 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 cc------gctgcctaaagcaacctatacctgcaaagaaacggtagtcaaaactttaatg 408
Query: 241 atatttttcagaaactaaaaaagccaactgagaatctgtgtagaaacacaagggccacaa 300
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 409 acgtttttcagaaactaaaaaagccaactgagaatctgtgtagaaacacaaaggccacaa 468
Query: 301 agagcaagcagtcctgagccaaagcaataaagatggaggcatcaggtaatctaaattcaa 360
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 469 agagcaagcagtcctgagccaaagcaattaagatggaggcatcagggaatctaaattcaa 528
Query: 361 aatagactacagagcttggggtgttaaaatagcatggcacggtatagaaacaaatcaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aatagactacagagcttggggtgttaaaatagcatggcacggtatagaaacaaatcaaac 588
Query: 421 aaatgatcagcagaacttaagagcaagttcggaaatgaacttgtcaattttagtc 475
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 589 aaatgaccagtggaacttaagagcaagtttggaaatgaacttgtcaattttagtc 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
