BAC Information

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BAC

Clone NameMSMg01-464A20
Chromosome6 (Build37)
Map Location 114,652,787 - 114,653,025
singlet/doubletsinglet
Overlap geneAtg7
Upstream geneTatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464A20.T7 (MSMg01no464_a20.b1)MSMg01-464A20.TJ (MSMg01no464_a20.g1)
ACCAG548560AG548561
length768769
length of high quality
(start - end)
241 (72 - 312)243 (69 - 311)
definitionCHROMAT_FILE: MSMg01no464_a20.b1 PHD_FILE: MSMg01no464_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:41 2005CHROMAT_FILE: MSMg01no464_a20.g1 PHD_FILE: MSMg01no464_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCAACAAAGGCGCGGAAT
TCTACCTTTTTCTAACAAGATTAGCGAGAGCCCGCAGATGTCTTTGGTTT
CTCTTAATAAGTAATTAAGTATAAATATCAAGTCCTCTGGAAACTCACTT
TGAATCTCAATTAAGTCTTCAGAAACCTGACTTGTAAGTTGTCCCCATGT
GAAACAATGGAGTACATTCTTGGAGTACTTCTCCAGGCTGGAGAATTCTT
GCTTATAACTGGGTCTTAAAAAAACGAGTCTGTATTTTCATGTAAGATGT
CTTGTCATGGATTTTATTTTCATACACAAGAGCATTTCTGCAAACCTTTT
TATTAAAGGTTCGTTTTCTGCATATCACCTTCATGTGTGTAAGTACATAC
ATGTAATGTCTGAGGTAGCCAGAAAAGGGCATCAGATCTCCTGGATCTGG
AGTCGTGTGCTATCACGAACAACTGGGTGGTTGCTGGTAACGTAACCCAG
GTCTCTCCAAGTATCATAGTATTCCTAAGCTCCGACGTTCTCTTCAGCCT
CATGTATTTCCTCAGTTTAGGAAATACATACCTTTATAGTTATACTATTA
ATTTTACACACAAAATTTTTCATATTTTCGCATTCCTGTATTTTACTTTC
TCATTATCACACTTGAATTGCTCCATGTACTTCTTTCATTGCATAGTCCT
CTATTCTTTTATCTTACTTGTTCCATTCCCGCTATTATTGGTTGATTGTC
CCACCTGGTTAGCACATG
ATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTTCAAAATTGAGGNGAACTA
TAGAATTTTCCGCAAAATTCTTGCTGGGACTGGAGATGGCAAAAGATAAG
GGAAAGTTGGTCCACAAATCCTTGCTCCTCTTGGGACAATGGCTGTGCTC
CCTGGAGCTGTACTGAAGTCACCTCTGGCAAGACAAACCTGGAAACTGAG
CTCGACGGTGCATCCTAGCGATCTGCATCCCTATATTTCTCGGCTAACCG
GGACCAAAGAACTGGGTGCTGGCAGGTGCTCTCTTGTTCCCAGAGGAGGA
GGCTATGTGTATGGTCNTACCTCCCAGGACCGGGTACTTCTTCCTAGGCA
CAGTGTGGGCCGGCCATCAGTCCCTTAGTAGGTCCTCAAAATTGATTCTC
CACTCTCCACTCGATTTGACATGAATGTAGTCAGTTGCTGTGTGGCTCCA
GGAAAGGGGGCACAGTGGACACTGTCTGGCACGGTCTCTCTCTCGCTCGC
TCTCTCGTCAAGTTCTCTTGTGAGCTTCCTGTACTACTCGCACGTCCCCA
TGTCCTGCGTGTTCTGCTTTCCATCCTCGCCATTATGAAGAAGTTGCCCT
CCTTTTCATGTGTATGCTCTCCAGGATGCCTATTGATCATTTTCTTTTTT
TTTACGTCCCCCCCTTATATTTACTTATCAATACATTTAACTTCCTAACT
CCCATTTCAATTAATACTCCCTCTTTTTCTCCCCTCTCCACTTTTCTACC
CCTATTTATCCTATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_a20.b1 MSMg01no464_a20.b1 CHROMAT_FILE:
MSMg01no464_a20.b1 PHD_FILE: MSMg01no464_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:41 2005
         (241 letters)



>mm_chr6_114652587_114653226
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcgagagcccgcagatgtctttggtttctcttaataagtaattaagtataaatatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagcgagagcccgcagatgtctttggtttctcttaataagtaattaagtataaatatcaa 380

                                                                       
Query: 61  gtcctctggaaactcactttgaatctcaattaagtcttcagaaacctgacttgtaagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtcctctggaaactcactttgaatctcaattaagtcttcagaaacctgacttgtaagttg 320

                                                                       
Query: 121 tccccatgtgaaacaatggagtacattcttggagtacttctccaggctggagaattcttg 180
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 319 tccccatgtgaaacaatggagtaccttcttggagtacttctccaggctggagaaatcttg 260

                                                                       
Query: 181 cttataactgggtcttaaaaaaacgagtctgtattttcatgtaagatgtcttgtcatgga 240
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 259 cttataactgggtcttaaaaaa-cgagtctgtattttcatgcaagatgtcttgtcatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)