BAC Information

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BAC

Clone NameMSMg01-465A11
Chromosome6 (Build37)
Map Location 108,471,643 - 108,472,116
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465A11.T7 (MSMg01no465_a11.b1)MSMg01-465A11.TJ (MSMg01no465_a11.g1)
ACCAG549305AG549306
length728765
length of high quality
(start - end)
473 (64 - 536)139 (73 - 211)
definitionCHROMAT_FILE: MSMg01no465_a11.b1 PHD_FILE: MSMg01no465_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:58 2005CHROMAT_FILE: MSMg01no465_a11.g1 PHD_FILE: MSMg01no465_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGNNGG
AATTAATTCTTCACCTCTGGAGAACAGCCAGTGTTCTTCACCACTGAGCC
ATCTCTTCAGCCCCTCCACAGACATTTGTGAAGAACATAAGGCACTTGTT
TTGTAGGAAATCCTTTGATTTGAGTTTCTCTGAAGGTCCCTTATAGTAGA
GCTAAGCGTATGCATTTGTATACGAATATTGAAGACACATTTTCTCACCT
TCTCAGTCTGCCACACCAGGGAAACATTAAGTCATAGCTTAAAGTATACA
GCTGCCGATACTCACTTTGTTCTCTTGGATAAGGACATATTTGGTATGTT
TCTCACAATAAAGTCACTGTATGGCAGGACACTTGGAAACCTTGTAAGTA
ACCTTGGTATTCCTCACTTTGCCCATTCAGCCCCAGACTTAGTATCCCCT
AGTGATTCTGCCTTGGAAATTATTTCCCATATTTATTTATTCAGTTCATT
AAGTTTGGCATAACATCTTACCTTAATTTTGAGTTAGCGTAGGCTGGCCT
TGAACTTGTGCTCCTCCTGCCTCAGCCTCCCAACTATGGGGATGTGCCAT
TGTATCAGGGTTCTGCCTTGATGCTCATTTCCCCCCTGGGGTTAGCCCGG
GAGAACCCTTCCGCTGCCTTTTGTGTTTTTGCCGGCCACAACTTTTTTTG
TACGGAAAATTTTTTGGCACCTAAAAAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGACATTGTCATTTCTTAGGTGCTAAAC
CATTTCAAAAACAGAGACTTTTAAACCTGCAAGATACTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCC
CTCCCTCCCTACCTACCTCCCTCCCTGCCTGCCTTGCCTTCCTTCTTTTC
TTCCGCTCACACCAACCAGATGTAGGCGGAAGTTCACTGAGTAATCTGAG
GACGACCTCGACATTTTTTTTTCTCAGGCGATAATTTTCTTCGATGTAAG
GCACACAGGTGTAGCCCCGCATGTAGAGCTTAGGCGCCACATTGTGTTTT
AATGGGTTTTGGAGCCAAACAGAGTGAAGTTATGGTCTGGTCTTAGTTTT
TGAAGTGCTGATGCCCCAGTCTTTGTAATGAACGCTGCTCGTGTATGAGC
TTAGACTTTGACCACCACACCATGATTGTCTGTGGGGGAGCCGTGGCGTG
GGAAGTCGTCGGGCTTTGTGTATAATGTGCCGTGGATACGATACTAGATA
TGTTGTAAGCGGTGTTCGGCTATGTAACAGACGTTGCCCCTTTGGCACCG
CCCCTCTATATGAGATTCTTTGACTAATTCTTACAGCGCGTAGTCACAAG
ATCCGTGTTGTGATGAACTTTTTTAAAACTGGCCCCCACCCCCCGCCTTT
TTATGTACTATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_a11.b1 MSMg01no465_a11.b1 CHROMAT_FILE:
MSMg01no465_a11.b1 PHD_FILE: MSMg01no465_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:58 2005
         (473 letters)



>mm_chr6_108471444_108472316
          Length = 873

 Score =  886 bits (458), Expect = 0.0
 Identities = 470/474 (99%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctggagaa-cagccagtgttcttcaccactgagccatctcttcagcccctccacaga 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cctctggagaaacagccagtgttcttcaccactgagccatctcttcagcccctccacaga 259

                                                                       
Query: 60  catttgtgaagaacataaggcacttgttttgtaggaaatcctttgatttgagtttctctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catttgtgaagaacataaggcacttgttttgtaggaaatcctttgatttgagtttctctg 319

                                                                       
Query: 120 aaggtcccttatagtagagctaagcgtatgcatttgtatacgaatattgaagacacattt 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggtcccttatagtagagctaagcttatgcatttgtatacgaatattgaagacacattt 379

                                                                       
Query: 180 tctcaccttctcagtctgccacaccagggaaacattaagtcatagcttaaagtatacagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctcaccttctcagtctgccacaccagggaaacattaagtcatagcttaaagtatacagc 439

                                                                       
Query: 240 tgccgatactcactttgttctcttggataaggacatatttggtatgtttctcacaataaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgccgatactcactttgttctcttggataaggacatatttggtatgtttctcacaataaa 499

                                                                       
Query: 300 gtcactgtatggcaggacacttggaaaccttgtaagtaaccttggtattcctcactttgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcactgtatggcaggacacttggaaaccttgtaagtaaccttggtattcctcactttgc 559

                                                                       
Query: 360 ccattcagccccagacttagtatcccctagtgattctgccttggaaattatttcccatat 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccattcagccccagacatagtatcccctagtgattctgccttggaaattatttcccatat 619

                                                                 
Query: 420 ttatttattcagttcattaagtttggcataacatcttaccttaattttgagtta 473
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatttattcaggtcattaagtttggcataacatcttaccttaattttgagtta 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)