Query= MSMg01no465_e04.b1 MSMg01no465_e04.b1 CHROMAT_FILE:
MSMg01no465_e04.b1 PHD_FILE: MSMg01no465_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:18 2005
(551 letters)
>mm_chr6_47158618_47159568
Length = 951
Score = 973 bits (503), Expect = 0.0
Identities = 536/547 (97%)
Strand = Plus / Minus
Query: 5 gaattcaatgtttacatatttgctacaaatacttctttcaaaaatagaaagattattaat 64
|||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 751 gaattcaatggtcatatatttgctacaaatacttctttcaagaatagaaagattattaat 692
Query: 65 acattatgggttttaaagggctgactaacttttattagcaaacaaatgttcctttgaact 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 691 acattatgggttttaaagggctgactaactcttattagcaaacaaatgttcctttgaact 632
Query: 125 attgtggaaaaaccaatggagtcatgagtccttctatccatggatggccatgacatcgtt 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 631 attgtggaaaaaccaatggagtcatgagtccttctatccatggatggccacgacatcgtt 572
Query: 185 ggaagaacatcttaggtatcagcttgcctgtcaaaatgtgattctcttgtctgtctttgc 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaagaacatcttaggtatcaggttgcctgtcaaaatgtgattctcttgtctgtctttgc 512
Query: 245 attgtagaacttccagaatgactattcaaagggtgatttgaattcttattattccacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 attgtagaacttccagaatgactattcaaagggtgatttgaattcttattattccacttt 452
Query: 305 gctgaccttcaagggccccaaggtctaaattctaggccattagcagcactatgctaagac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gctgaccttcaagggccccaaggtctaaattctaggccattagcagcactatgctaagac 392
Query: 365 tttttatattcctgagttggttcccctaatatttccatgttccatttttggaccctaaga 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 391 tttttatattcctgagttggttcccctaatatttccatgttccttttttggaccctaaga 332
Query: 425 tgccgtagagctgagtggaaactcaggtttgagtactaggagacactgagaagtgacgat 484
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 331 tgccatagagctgagtggaaactcaggtttgagttctaggagacactgagaagtgacgat 272
Query: 485 gcaggagaaggtcagcatctacctcagagactctggcttgatgtacctactactctactt 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcaggagaaggtcagcgtctacctcagagactctggcttgatgtacctactactctactt 212
Query: 545 aatttgg 551
|||||||
Sbjct: 211 aatttgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_e04.g1 MSMg01no465_e04.g1 CHROMAT_FILE:
MSMg01no465_e04.g1 PHD_FILE: MSMg01no465_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:18 2005
(498 letters)
>mm_chr6_46978558_46979458
Length = 901
Score = 890 bits (460), Expect = 0.0
Identities = 490/502 (97%), Gaps = 5/502 (0%)
Strand = Plus / Plus
Query: 1 ttcatctaagctaatacagtggcccactgatatttggtaatatg----aaaggcaggtgc 56
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttcatctaagctaatacagtggcccactgatatttggtaatatgtgtcaaaggcaggtgc 260
Query: 57 tctctttagctttagacaccacaaacaaaagctactcatgcttcagggaagaatccaccc 116
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tctctttagctttagacaccacaaacaaaagctactcctgcttcagggaagaatccaccc 320
Query: 117 tgaccctgctttgtacaccccaacatgtatcaaagcattgatcatggctggttatggagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccctgctttgtacaccccaacatgtatcaaagcattgatcatggctggttatggagt 380
Query: 177 ctgtagtaagaccttgggctggccaagagctggaagtcaggcaggacatgaaatagccct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ctgtagtaagaccttgggctggccaagagctggaagtcaggcaggacatgaaacagccct 440
Query: 237 ggaaagtattatctgtactacaaaatctcagtaggaaaaggccaaggcagacagaggatc 296
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 441 ggaaagtattatctggactacaaaatctcagtaggaaaagaccaaggcagacagaagatc 500
Query: 297 acagtcagccagatagacggtttagcaagagaacttcatgcaaaattatgttttcttcct 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 acagtcagccagatagacggtttagcaagagaacttcatgcaaaattat-ttttcttcct 559
Query: 357 ttttcctgatgagactcctcacatgaagcagtatgatacagaaatatgctcttccttccc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttcctgatgagactcctcacatgaagcagtatgatacagaaatatgctcttccttccc 619
Query: 417 taccttcccgcttctccttctcctcttttctcccctttcttatctcttatcatcaaagcc 476
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 taccttcctgcttctccttctccttttttctcccctttcttatctcttatcatcaaagcc 679
Query: 477 cttacaaagattgcctaagtta 498
||||||||||||||||||||||
Sbjct: 680 cttacaaagattgcctaagtta 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 901
Length adjustment: 10
Effective length of query: 488
Effective length of database: 891
Effective search space: 434808
Effective search space used: 434808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
