BAC Information

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BAC

Clone NameMSMg01-465K19
Chromosome6 (Build37)
Map Location 59,259,293 - 59,259,529
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2
Downstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465K19.T7 (MSMg01no465_k19.b1)MSMg01-465K19.TJ (MSMg01no465_k19.g1)
ACCAG549799AG549800
length7591,644
length of high quality
(start - end)
247 (68 - 314)---
definitionCHROMAT_FILE: MSMg01no465_k19.b1 PHD_FILE: MSMg01no465_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:52 2005CHROMAT_FILE: MSMg01no465_k19.g1 PHD_FILE: MSMg01no465_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGTGGCCGCTAAAAGAAACACAAGTGCAAAGAGGAGCNGNGGAANTC
TCATATTACCAATATGTTTGAAAATACTTTTAAATAAAAATATTTCCAAA
AGTAAATAAAGTTTAACACACATTAGTAAATGTGTCACTCATTTGCAACT
GTAGATACATCTGTATCATTTCCTTAATAGATCCCTTCCTTCTGTTGTTC
TCCTTCCTCCCTTGCTCCCTCCCTTCCTCATTTCTTCCTTCCTTCCTTCT
GTTCGTCTTCTTTTTAAGACAATTCATTAACCTTGCTCTTTTCTTCTTTC
CCTTTCCAGCTATTATTTTCCTAGCAGGGACTGTCTCTTCTCTTGAGCAC
CTTGAGCACATCTCTGCACATAGCAAGAAATCATAGTAAAGCCTCTGACA
AGTGTCCTCCATTACCACATCTTGACTTTCTCTCAAGTACTCTGTGTTAG
ATTTTACTTCCATGTCGTGCATGCCCCTCTAAAGCCCCAAATATCTGTAT
TCTGAGCACAATTCACTGACATGCATTTGCTAATGTCACAATGAATTGTG
TTCTCAGTGCTAATGAAAACATTTAATTACAACCCCACCATAACCGCTTC
TTTATATTTAAAAAACTTAGCTAAGCCTGCCCTTCCCCTCAAAGATATCT
TTTTATTTAAAGGTCCCCCCCTTGCACAAACGCCTAAGTTTGGGTAATCC
TACCTTAGTGGTTTTAAATAATATTATTCTCTCGACCTTCTATCCTACCC
TCTATAAAG
TTTTCTCCTCTCTCCCCTCCTNCTCCTCTCTCCGTCTGCCCCCTCGCGCC
CTATTCCCTACTCGCCTATTGTATTAGCACACGACCGTGTCTCGTTTATC
GTTTGTTCTTCGTGCGCGCCGCAGACGCCAGCCGCATAGCCGTCACCACA
TAACGATGATCAACCACTGCCAAGTAAATCCGATATCGTCACACAGCCAC
TATACGCGCAACTATCGTCTCTTTCCCGCGCGCGATCGGTGCTTGCGTTG
CGGACTCCTCTGCCACGCCTCTGCGCATTCTCACGCTCTATATTCTCGTN
TCTGTGCTTCCTATTATCTCGTCCACGCCACCGCCGCACACTCTGGCCCG
AACTCAACTAACTATTTTATATCTATACGCTTGGCCACTCCTTCGCAATT
ACCTCACCCGTAATATCCTCGAAGGCGTGTAATATGGTATGTGTGGGCTG
AGCCACGGTTGTATGAATCATCTATACTAGTTCAATAACATGATTTGGCC
GGCCGTGCGCATGCTCTGCCGCGACCAGCCCGTGCGTGTAGTGGTTATTG
ATGCTGGTGTGTCCGCTCACATCATATCGTCTATTAGAGCCAGGAACGGA
GGCGTGGGCCGCGCGCCGACGCGTTGTTTGCGTGTCCCGCCGCAACAATT
CGATGTGGCGTGGTATAACATGAGGACAGCCGACCTGCGGAGTTCGCCAC
ACCGCTCCATGCTTTGCTTGACGCGCCGACACTGTCCATATTCTCCGCAG
CGCGCTGCCCGCGCCCGCGAGACTGTCCATATGCACTCATTGTGATTGTG
GTACCGTCGACGCCATACGATCGTGTACTCTTGTGTTCGTGTACGCAGGC
GCGTCAAGCTCGGGATCGTCGCATCACTTCTATCACTGTATATAGCGTGT
GATCACTGCACCGCCGGGACCGACGTCTAACGCACGTACTCGAACGCCAG
GTAGCAGCAGACGAGGGCACACAGTTGACACTATTGTTGTGACGCGCTCT
GTTATGTGGCGTAGTACACGAATACACTAGCACGTATGGAGTCCGTAGCC
GCAGACGAATACAATAATANATCGAGAGAGTGCGTGTGATAGCGTGCGTG
ATGNACGCGAGGACGTAATCGCGTGCGCACTGTGACANTGTACAGCANAC
GACCGCAGCGCCTCGANACAATAACAGATAGANANCTGCGATCGGCAGAC
TAGAGAGCATCAGACAGGCTGAAGGTATTCGAATCCGTTTGACTTGTCGG
AGTCGCACGCTGCCGCCGGTCGGTGTGTCGCGCGCGCGTTGTGTTGANCA
CACACGCTGTCGCTCGGCGTCCTATCTCGACATACTCTAGTGAGACCGNA
CGTAGCCACCGACCGACNCCTCTCTGAGCAATAGTACTATGTATTGAGAT
AGTGTCTCGTAGATGCAGTGACGTGAGGGATATACATGCAGCGCGGTGGC
AGCGCGCGGTCGAGTGAGCTGTATAGTCGGTGNGAGCGCGGATTGCGAAC
ACGATAGTTGGATTCGGGATGACCGTAGGTCGTGTGCAAAATTAANATCN
AGCAACGAAGGACGACGATCAACGTCACGCGACACATCACAACGATATAT
TATTTGTCATCATACGTAGATAACGATTACGTTNGTGTATACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_k19.b1 MSMg01no465_k19.b1 CHROMAT_FILE:
MSMg01no465_k19.b1 PHD_FILE: MSMg01no465_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:52 2005
         (247 letters)



>mm_chr6_59259093_59259739
          Length = 647

 Score =  416 bits (215), Expect = e-121
 Identities = 234/245 (95%), Gaps = 8/245 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaaatacttttaaataaaaatatttccaaaagtaaataaagtttaacacacattagt 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 ttgaaaatacttttaaataaaaatatttccaaaagtaaataaagtaaaacacacattagt 260

                                                                       
Query: 61  aaatgtgtcactcatttgcaactgtagatacatctgtatcatttccttaatagatccctt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aaatgtgtcactcatttgcaactgtagatacatctgtctcatttccttaatagatccctt 320

                                                                       
Query: 121 ccttctgttgttctccttcctcccttgctccctcccttcctcatttcttccttccttcct 180
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 321 ccttctgttgttctccttcctccct--------cccttcctcatttcttccttccttcct 372

                                                                       
Query: 181 tctgttcgtcttctttttaagacaattcattaaccttgctcttttcttctttccctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctgttcgtcttctttttaagacaattcattaaccttgctcttttcttctttccctttcc 432

                
Query: 241 agcta 245
           |||||
Sbjct: 433 agcta 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)