BAC Information

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BAC

Clone NameMSMg01-465M07
Chromosome6 (Build37)
Map Location 93,517,235 - 93,517,418
singlet/doubletsinglet
Overlap genenone
Upstream genePrickle2, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M07.T7 (MSMg01no465_m07.b1)MSMg01-465M07.TJ (MSMg01no465_m07.g1)
ACCAG549871AG549872
length741793
length of high quality
(start - end)
186 (317 - 502)175 (72 - 246)
definitionCHROMAT_FILE: MSMg01no465_m07.b1 PHD_FILE: MSMg01no465_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:00 2005CHROMAT_FILE: MSMg01no465_m07.g1 PHD_FILE: MSMg01no465_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTTGCNGGCGCTATANGAATCACTTTTCAAAGAGGATCCGCGGAATT
CACTATTTCTTTGAGGATTTACAATGGGATAGCATCAGGGAAGAGAAAGC
AGGCTTACATGGACAGTGTAAGGCTAATGGGTTCCTTGGGGGCTGTAGCT
TGCCTAGGCATCTTCCTGGATTCCTCTCTCTTCTTCCTGTGAGCCACCGA
GGTGAGCAACCTCTGCCTCCACAGGCTCCCACCACCATGGTATTCTAACT
CACAATGGGCTCAGAAACACAGTGTAAAGTGAACACAGACTCTAAAGCCT
TCAGCCAAAATGGTCTTTTTTACTTTTAAGTTCAAACAGATATTTAGTCA
CAGAAACCCCTAAGATGAACTAATGCAAACCTCAAGCGAGCCTCCCTGAG
TCCCCGCCACAAACATTCAACCAATAAAATGTGAACTTCCGTGGGAAATA
AGATGTTCAAACCTCTATGTCATTTGCAGAAAGAGCAATATTCTATAACT
GTAAGGACAGGAGGGAGTATACCCTAATATATTAATTTATCTAATTGGGC
GGCAAGAATCGATGTTATCAGAACTCCATTCTACCTAAGTGAAGGGGATT
TTTAGGAATTGGGATATTGTGGCCCCACCTGTCCCCCGGCTTTTCTTTTT
TTTTTTTATCCTCGTTTCACCCCCCCCTTTCCAACATACGACTTCCCTTT
TTCGGAATCGTGTGGTCCCTCTTCTCTGGGGCCTTACTTCN
GAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGAGCCCTCTGAAAAAGGTGCAGTACT
AGTTCTGGGTTTTACACGAAGTTGAGATCTCAAGAGTGTCAGATTTTCCC
AAGACTGCACACCTGGCTGAGTTTTGGCCCAGGAATCTGGGCTCCAGAGA
CTGTGCTTAAACACTATGCTAAATGCCTCTTGAGAGAGGGGGGGGTTAGA
GTGTTTTTTTTNTTTTTTTTTTGCGTTTTTTTTGTTGTTTTGTGTTTGGG
GGGGTTTTTTTTTTTNGGNGGGCCCCCCGCTGCCTTTCTTCACGCTTTTT
TCCCTCCCTTTCCTCTCTGTTGGTCTTGCTCCTCTTTTTTCTTTTTTTCT
CTCTCCCACTTTTTTCCCTCGTATTTTTTTTTCTCTCCTTTCTCCCTTCC
TTCTCTGCCCGTCCTCCGCTTCCTTCCCCCTTTCCTTTTTCTTCCTTCTC
GTCTCTCTTCTTTCCCGCTTTCCCCCTCTTTCCTCCTTCTTCTCTCTTTT
TTCTTTACGTCTGTTTTTTCCTCTTCTTTCTACTTTTCTCTCCTCTTTTC
GTCTTTTTTCTATCCCCCTTCTCTCATTCTTACCCCTGACCCACCCTATC
TCTACCTTCCTCTTATACTTTTTTCTTTCACCCTCGCTCCCGCTTCTTCC
CTCCCCTCCCCTTCTCTTTCTACTCTCTTTTTATTAGCGCATCGTCGCCG
TCTCGTCTCACCACCATTTGTTCTTGTTAACATTCTATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m07.b1 MSMg01no465_m07.b1 CHROMAT_FILE:
MSMg01no465_m07.b1 PHD_FILE: MSMg01no465_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:00 2005
         (186 letters)



>mm_chr6_93517033_93517618
          Length = 586

 Score =  317 bits (164), Expect = 2e-91
 Identities = 179/184 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttacttttaagttcaaacagatatttagtcacagaaacccctaagatgaactaatgcaa 62
           |||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||
Sbjct: 203 tttacttttaagttcaaacagatatttagtcacagaaacaattaagatgaactaatacaa 262

                                                                       
Query: 63  acctcaagcgagcctccctgagtccccgccacaaacattcaaccaataaaatgtgaactt 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acctcaagcgagccttcctgagtccccgccacaaacattcaaccaataaaatgtgaactt 322

                                                                       
Query: 123 ccgtgggaaataagatgttcaaacctctatgtcatttgcagaaagagcaatattctataa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccgtgggaaataagatgttcaaacctctatgtcatttgcagaaagagcaatattctataa 382

               
Query: 183 ctgt 186
           ||||
Sbjct: 383 ctgt 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)