BAC Information

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BAC

Clone NameMSMg01-465O20
Chromosome6 (Build37)
Map Location 76,054,391 - 76,054,910
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465O20.T7 (MSMg01no465_o20.b1)MSMg01-465O20.TJ (MSMg01no465_o20.g1)
ACCAG549992AG549993
length758720
length of high quality
(start - end)		520 (66 - 585)---
definitionCHROMAT_FILE: MSMg01no465_o20.b1 PHD_FILE: MSMg01no465_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:13 2005CHROMAT_FILE: MSMg01no465_o20.g1 PHD_FILE: MSMg01no465_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AAATTTAAAAAAAATAACAATGTTTGAGAAACATTTAAAAAAATATTCAG
TATCTTCAGGTATCAGACAACTGGAAATCTAAACCAGTTTGAGACTTCAC
CTCACAGCAGTCAGATTACTAAAGCAGATGACAGCTCACGCCAGCATAGA
AGTAGAAAAGGCAAACACACATTCATTGCTGGTAGAAGTACAAATATGTA
TAGTAACTACAGCAATTACTCAGGAAGACTGATATCAATATGCCTCAATC
TACCTACTACTAATTTACAAAACAAGTAATATCCACAATGATTTATAAAA
ATTTGCCCTTATACACAGAGATCAGTGTGGTCTTAACATCTCTATTATTT
GCTATAACAGTTTCCATATTTTCTTATATGTAGTATAAGAAGCTAAGCTG
GTCCACAATCTGAGGTAGATATGATTGATCATAACCAAATTCAATCCTCC
AAATCGTCTCTCTTGACTTCAAGGTTTCCCTCCTCCTCAGTTTCTTTCAG
CCATCCCCTAATTTAATCACAGAGGTCAGTAGCTTCTGCCCATTGGTTGG
GTGCAATATCTGCATCTGACTCTTCAGCTGGTTGTTGAGGCCTCCAGAAG
CGGGCATGCTAGCTCCCCTTTTTTGAGCACCTCCTAGGCCCACGATAAGA
GCCAGGGCTGGGCCACCAAAATGGGGCTAACTGGGTTGAATTGGGGGCCC
CCACACAN

AAACCTGNCNCCCCCTGTTCACAAATTTAGGTGACACAAAAAGTACCACA
AATTCTCGTACTCTACCTCCCTACCCTACCCCTTAAGTGTGTGTCCCCCC
GCTGTGTGTGTGTGTGCGTCCCCCCNCCNCCNCNCCCCCCCCCCCCCCCC
CCCCCCCNCNNNNNNCCCCCCCCCCCCNCCCCCCCCCNCCNNNNCNCCCN
NCCCCCCCCCCCCCCCTTTCNNNNNNTCNNNNCCNNNNNNNCCNNNNNNN
CNCNNNCNNNNNNNCCCCNNNNCCTTTTTTTTNNNNNNCCCCCCCCNNNN
NNCCNNCNNCNNCCCCCCCCCCCCCCCCNCNNTCCCCCCNCCCCNCCCCC
NNNNCCCCCCCCCCCCCCCCCCCCCNCCCCNNNNNNNNNNNNNCCCCNNN
NCCCNNCCCCNNCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNNNCNNCCCNCCCNNNNCCCCCCCNCCCCCCCCCCCCCCCCCCCN
NNCCCNCCCCCCCCCCCCCCNNNCCCCNNCNCCACCCTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCCCCCNNCCCCNNCCNCCCNCCNNCCCCCA
CCCCCCCACCNCCNCCCCCCACCCCCCCTTNCCCCCCCCCCCCCCCCCCC
ACCCCCCTCNCCCCCNCCTCTTCCCCACCCCCCNTNCCCCACCCACCCCA
ACAAATAAAAAAAATTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_o20.b1 MSMg01no465_o20.b1 CHROMAT_FILE:
MSMg01no465_o20.b1 PHD_FILE: MSMg01no465_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:13 2005
         (520 letters)



>mm_chr6_76054191_76055110
          Length = 920

 Score = 1006 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatgtttgagaaacatttaaaaaaatattcagtatcttcaggtatcagacaactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaatgtttgagaaacatttaaaaaaatattcagtatcttcaggtatcagacaactgga 260

                                                                       
Query: 61  aatctaaaccagtttgagacttcacctcacagcagtcagattactaaagcagatgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctaaaccagtttgagacttcacctcacagcagtcagattactaaagcagatgacagc 320

                                                                       
Query: 121 tcacgccagcatagaagtagaaaaggcaaacacacattcattgctggtagaagtacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacgccagcatagaagtagaaaaggcaaacacacattcattgctggtagaagtacaaat 380

                                                                       
Query: 181 atgtatagtaactacagcaattactcaggaagactgatatcaatatgcctcaatctacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtatagtaactacagcaattactcaggaagactgatatcaatatgcctcaatctacct 440

                                                                       
Query: 241 actactaatttacaaaacaagtaatatccacaatgatttataaaaatttgcccttataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actactaatttacaaaacaagtaatatccacaatgatttataaaaatttgcccttataca 500

                                                                       
Query: 301 cagagatcagtgtggtcttaacatctctattatttgctataacagtttccatattttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagatcagtgtggtcttaacatctctattatttgctataacagtttccatattttctt 560

                                                                       
Query: 361 atatgtagtataagaagctaagctggtccacaatctgaggtagatatgattgatcataac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgtagtataagaagctaagctggtccacaatctgaggtagatatgattgatcataac 620

                                                                       
Query: 421 caaattcaatcctccaaatcgtctctcttgacttcaaggtttccctcctcctcagtttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaattcaatcctccaaatcgtctctcttgacttcaaggtttccctcctcctcagtttct 680

                                                   
Query: 481 ttcagccatcccctaatttaatcacagaggtcagtagctt 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcagccatcccctaatttaatcacagaggtcagtagctt 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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