BAC Information

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BAC

Clone NameMSMg01-466C22
Chromosome6 (Build37)
Map Location 94,968,034 - 95,155,276
singlet/doubletdoublet
Overlap geneLOC100043680, Kbtbd8
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
Downstream geneLOC435912, Suclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C22.T7 (MSMg01no466_c22.b1)MSMg01-466C22.TJ (MSMg01no466_c22.g1)
ACCAG550188AG550189
length795771
length of high quality
(start - end)		240 (78 - 317)423 (82 - 504)
definitionCHROMAT_FILE: MSMg01no466_c22.b1 PHD_FILE: MSMg01no466_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:34 2005CHROMAT_FILE: MSMg01no466_c22.g1 PHD_FILE: MSMg01no466_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,155,037 - 95,155,276)(94,968,034 - 94,968,431)
sequence
TCTCTTTCAATAATTTGCGGCGCTATACGACTCCTATATTTCGAGAACCG
CGGAATTCTCTCTCCTTACCCAAATAGGTCTCACTTTCATTTTTTGTCGA
ATGTTGATCTGAGTTTTTAAGCCCTAGCGATTCTTGTGCCTGTGTGCATC
TTCGAGGTCTGCTTTCTCTGTGTTAGGAGACTCTTGGGTGCAGGGCTGTC
CATGCTGTTACCTTTGCTTGCCTGCACTGTTCAGGGGATCAGATGTGACA
AGAGAATGCTGTGGTTTGTGGCTTTCCTCATTGAGGATTGTCAGGCTCCT
TAATTTTTCTAAGGAGCATTTTTCTGTTTTCCTCTCTGCTGCCCTGTGCT
CTGGCTTTGATGTGTGTTTGCTCTAGTGCCTGCCAGTTCTTTTCTCCTAC
TAGCTTTCAATGTCTGTGCTCCTCCTATCTCTTTCATTTTTATCATATCT
CTTGAATTGTAGCTCTTATTGCGTTTCTTCTTATTTTAATTTCCTATTTG
TCTCATTCAATTCCTTTCATGTTTTTGTTGCATCTGATCCCTTGACTACT
CCTTTGATTGCATCGGCGTATCTCTTTTTCCTCTTTTTCTTCTTTTTTTT
CTTCTTTCTCTCCGTCTTTTTGTTTCTTTTTTTCTTCCTTCTCGTATCCT
CCTCAATTATTTTTTCTTCCCCGCTCTTTTCTCTTGTTTCTCCTCCCTCC
TTTATTTTTTTCTCTCGTTTTATATCCCTTTGGCGTTCTTTCTTCTTCTT
CTTTTTTTTTTTTACTTCACCCTTTTCTCTCCTCCTTTTTTTTTC

NNGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTCATCCAGAGGCAGT
GAGCTTCACCCCTGAATGCTGTCAGAGAGCCTTCAGATGTCCCCATGTGT
TCCGCCATCGTGCCTGTACTCATTGTCATTCATCAAGACGCCCGTTCTCA
TGTCAGCTCATTCAATGTGACATTTGCTTTCACTTTCCTTTCTGGGGCAA
AGTCCTTTTGAGCCTCAGGAGTGCCGGTTATGGCATAATTATTACTGCTT
TGAGTAATATGCCTTGGTGCATTCTGATTTAATTTAGGGAGAAAGAATTT
CATGAGTGTTCTATGGGTTCTTTTGTTTCTCTGGTAGAAGTAGTACTGGG
TAAGGAAAATTCAGCCTTCTACATTCTTTGATAGGAAAACCAGGCCCTTA
ACTTAAGTAAAAATTAATTTTTACTACTGGGCCAGTGAGACAGTATTTTG
ATATTTTAATAACTCAGTGTGTTTAGAAAATGGCTGTGTAAAAATTTTTA
CAAAGCTAAAAACTTCTTCTTAAAATAGAATTAACACATGGTTTCCAAAT
ATTTGCCATAATTTTTTAAAGCTATTTGAACCCCCCGAAAACGGTGATTT
ATTCCTAAATACAAGTTAGTAAAGAACTCTTCTTCGTGTTAAAATCGATC
CTTCTTTCTCTTACCCCAGTGTTTATTTATTCATCTTATTTCCCTTATTT
TTACCCTCATTTTTATTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c22.b1 MSMg01no466_c22.b1 CHROMAT_FILE:
MSMg01no466_c22.b1 PHD_FILE: MSMg01no466_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:34 2005
         (240 letters)



>mm_chr6_95154837_95155476
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctcactttcattttttgtcgaatgttgatctgagtttttaagccctagcgattcttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 gtctcactttcattttttgtcgaatgttgatctgagtttttaagccatagcgattcttgt 381

                                                                       
Query: 61  gcctgtgtgcatcttcgaggtctgctttctctgtgttaggagactcttgggtgcagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcctgtgtgcatcttcgaggtctgctttctctgtgttaggagactcttgggtgcagggct 321

                                                                       
Query: 121 gtccatgctgttacctttgcttgcctgcactgttcaggggatcagatgtgacaagagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtccatgctgttacctttgcttgcctgcactgttcaggggatcagatgtgacaagagaat 261

                                                                       
Query: 181 gctgtggtttgtggctttcctcattgaggattgtcaggctccttaatttttctaaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgtggtttgtggctttcctcattgaggattgtcaggctccttaatttttctaaggagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no466_c22.g1 MSMg01no466_c22.g1 CHROMAT_FILE:
MSMg01no466_c22.g1 PHD_FILE: MSMg01no466_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:34 2005
         (423 letters)



>mm_chr6_94967809_94968631
          Length = 823

 Score =  739 bits (382), Expect = 0.0
 Identities = 394/398 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  cacccctgaatgctgtcagagagccttcagatgtccccatgtgttccgccatcgtgcctg 85
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 226 cacccctgaatgctgtcagagagccttcagatgtccccatgtgttccgccattgtgcctg 285

                                                                       
Query: 86  tactcattgtcattcatcaagacgcccgttctcatgtcagctcattcaatgtgacatttg 145
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 286 tactcattgtcattcatcaagacacccgttctcatgtcagctcattcaatgtgacatttg 345

                                                                       
Query: 146 ctttcactttcctttctggggcaaagtccttttgagcctcaggagtgccggttatggcat 205
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 346 ctttcactttcctttctggggcaaagtccttttgagcctcaggaatgccggttatggcat 405

                                                                       
Query: 206 aattattactgctttgagtaatatgccttggtgcattctgatttaatttagggagaaaga 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aattattactgctttgagtaatatgccttggtgcattctgatttaatttagggagaaaga 465

                                                                       
Query: 266 atttcatgagtgttctatgggttcttttgtttctctggtagaagtagtactgggtaagga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atttcatgagtgttctatgggttcttttgtttctctggtagaagtagtactgggtaagga 525

                                                                       
Query: 326 aaattcagccttctacattctttgataggaaaaccaggcccttaacttaagtaaaaatta 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaattcagccttctacattctttgataggaaaaccaggcccttaacttaagtaaaaatta 585

                                                 
Query: 386 atttttactactgggccagtgagacagtattttgatat 423
           ||||||||||||||||||||||||| ||||||||||||
Sbjct: 586 atttttactactgggccagtgagaccgtattttgatat 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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