Query= MSMg01no466_d24.b1 MSMg01no466_d24.b1 CHROMAT_FILE:
MSMg01no466_d24.b1 PHD_FILE: MSMg01no466_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:40 2005
(468 letters)
>mm_chr6_21243468_21244337
Length = 870
Score = 702 bits (363), Expect = 0.0
Identities = 449/497 (90%), Gaps = 34/497 (6%)
Strand = Plus / Plus
Query: 1 tagatttccttctatgttaagtgctaaatgtacacagtctatcacaa----------aca 50
||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 179 tagatttccttctatgttaagtgctaaatgtacacagtctaacacaaaaacatacacaca 238
Query: 51 cacacacacacaaatac------------atacacaaacacatgcatacgtgcacatgct 98
|||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct: 239 cacacacacacaaacacacacacacacaaatacacaaacacatgcatacgtgcacacgct 298
Query: 99 catatgtgtgtatgcacacacatacacatttttcatacatttggccatcataaaaattgc 158
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct: 299 catatgtgtgtatgcacacacatacacattttttatacatttagccatcataaaatttgc 358
Query: 159 atctgtatatactgaggtagaacatgtcttgaactttccatcattctgatataaacctag 218
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 359 atctgtatatactgaggtagaacatgtcttgaaattttcatcattctgatataaacctag 418
Query: 219 ggtaagaaatcttgcttcatt-----atttttattccagttt--aaaaaaaattaggagc 271
|| |||||||||||||||||| | |||||||||| ||||||||||||| ||
Sbjct: 419 gggaagaaatcttgcttcattagggca-----attccagtttaaaaaaaaaattaggtgc 473
Query: 272 gaggagctgtcatgctgctcctttgtcaccagagcctcaccatggcatcagctgtaggta 331
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 474 gaggagctgtcatgctgctcctttgtcaccagaccctcaccaaggcatcagctgtaggta 533
Query: 332 ttcttccactccccatcaacacttgaaatgtcattatctgatattacccatagggatgaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttcttccactccccatcaacacttgaaatgtcattatctgatattacccatagggatgaa 593
Query: 392 taagacactgtcatagttctcagtgattcggattgtattttctaaaggattggcagtatt 451
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 594 tacgacactgtcatagttctcagtgattcggattgtattttctaaaggattggtagtatt 653
Query: 452 gaccgtctctttgtagg 468
|||||||||||||||||
Sbjct: 654 gaccgtctctttgtagg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space: 393880
Effective search space used: 393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_d24.g1 MSMg01no466_d24.g1 CHROMAT_FILE:
MSMg01no466_d24.g1 PHD_FILE: MSMg01no466_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:40 2005
(434 letters)
>mm_chr6_21387620_21388453
Length = 834
Score = 785 bits (406), Expect = 0.0
Identities = 427/434 (98%)
Strand = Plus / Minus
Query: 1 aggaacggaccaccttctctggaccccatctctggagttatggatatgctcagtattccc 60
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggaacggaccatctccactggaccccatctctggagttatggatatgctcagtattccc 575
Query: 61 agatttcacatggggtatggtgaccctaacccagctctgcttgttgtagacattgtactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agatttcacatggggtatggtgaccctaacccagctctgcttgttgtagacattgtactt 515
Query: 121 gctgggtcatctcttcagcccaaatgtctcatgcttctttcaaaaccttactccttatgg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gctgggtcacctcttcagcccaaatgtctcatgcttctttcaaaaccttactccttatgg 455
Query: 181 gtctcattagcttttatttatttgtatgtacgttttacttttgacctacccttcttctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtctcattagcttttatttatttgtatgtacgttttacttttgacctacccttcttctgt 395
Query: 241 agctaacagtgaaatttcttcacaacataaggtttagaaaccaaagtaaaaaattattaa 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 agctaacagtgaaatttcttcacaacataaggtttaaaaaccaaagtaaaaaattattaa 335
Query: 301 taacaaatccatatggattcattacactcagacacatacctgcagatacacatctttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taacaaatccatatggattcattacactcagacacatacctgcagatacacatctttctt 275
Query: 361 cttgcaatgactataggcagtaggtatttctaaatctttcctttttatatatttatcgat 420
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 274 cttgcaatgactataggcagtaggtatttctaactctttcttttttatatatttatcgat 215
Query: 421 catgcacaattagt 434
||||||||||||||
Sbjct: 214 catgcacaattagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
